BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67780.1
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475882 jgi|Araly1|475882|fgenesh2_kg.2__1012__AT1G67780.1 1709 0.0
Ahg925969 jgi|Araly1|925969|scaffold_201530.1 259 4e-68
> Ahg475882 jgi|Araly1|475882|fgenesh2_kg.2__1012__AT1G67780.1
Length=1584
Score = 1709 bits (925), Expect = 0.0
Identities = 1056/1119 (94%), Gaps = 9/1119 (1%)
Strand=Plus/Plus
Query 427 AATGATGATTCTATGGAAGGTAGTAGTGGCAATAGTGATTCTGTTTCGGGGACAGATGTT 486
|||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 469 AATGATGATTTTATGGAAGGTAGTAGTGGGAATAGTGATTCTGTTTCTGGGACAGATGTT 528
Query 487 GAAGTAGCTGATGTTGCCAAGGATAAGAAAAAAGTGGTGGGCAAGAGCAAGAAAGCCAAT 546
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 529 GAAGTAGCTGATGTTGCCAAGGAGAATAAAAAAGTGGTGGGCAAGAGCAAGAAAGCCAAA 588
Query 547 GCCACTCACAAGCTGAAAGAGGAGATTCAGTTTGAGGCTCAACTTCCTCAGGGTATAAGC 606
|||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||
Sbjct 589 GCCACTCACAAGCTGAAAGAGGAGATTCAGTTTGAGGCTCAACTGCCACAGGGTCTAAGC 648
Query 607 TTGATTTCTGTGTCAGGCGTTGTTATACCAACTGAAGAAGCTGGAAATGTATTCCAGCTT 666
|||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TTGAATTCTGTTTCAGGCATTGTTATACCAACTGAAGAAGCTGGAAATGTATTCCAGCTT 708
Query 667 TTCGAGTTTTGCTCAGCCTTTGGAAAGGCTCTTGAGTTGAAGGAAGGACAAGCTGAAACT 726
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 709 TTTGAGTTTTGCTCAGCCTTTGGAAAGGCTCTTGATTTGAAGGAAGGACAAGCTGAAACT 768
Query 727 GTTGTCCGTGAGCTCTTCTCATGTGGGCGTAACACAAGGAGACAACAATACTGCTCTATT 786
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 769 GTTGTTCGTGAGCTCTTCTCATGTGGGCGTAACACAAGGAGACAACAGTACTGCTCTATT 828
Query 787 ATCCAGCTGATGATCCAATTGTTGGATTTAATATCAAAGGATAGAGAGATGTCCTTGTCT 846
||||||||||||||||||||||||||| |||||||| |||||||||| |||||| |||||
Sbjct 829 ATCCAGCTGATGATCCAATTGTTGGATCTAATATCACAGGATAGAGAAATGTCCCTGTCT 888
Query 847 CTAAGTGTGTCTGACA--A-TTGGTTCACTGCTCTTGGAGAGATCCTATTGCAGTCAGAA 903
|||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct 889 CTAAGTGTATCTGACAGCAGTTGGTTCACTGCTCTTGGAGAGATCTTATTGCAGTCAGAA 948
Query 904 GTTTTGAGTGATGAGTTCCCACCTGAAACTTTTGAAA-CAGGTGTTGCTGAGTATGAGAA 962
|||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 949 TTTTTGAGTGATGTGTTCCCACCTGAAACTTTT-AAAGTAGGTGTTGCTGAGTATGAGAA 1007
Query 963 GATGGATGCATCAAGAAGGCTCAAGCTTCTCAACTTCGTATGTGATGAATCACTTAGCAC 1022
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1008 GATGGATGCATCAAAAAGGCTCAAGCTTCTCAACTTTGTATGTGATGAATCACTTAGCAC 1067
Query 1023 TTGGGCAATGAGGAATTGCATTAAGAGCCAGAGTACAGAGTGTAAAGCAAATAACAACGA 1082
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 CTGTGCAATGAGGAATTGCATTAAGAGCCAGAGTACAGAGTGTAAAGCAAATAACAACGA 1127
Query 1083 AGCTAAAAGAAAGGCTGCAGCTGCAAAGGAAAAGGAGAAGCAGCTTAAACAGAAGTTGCA 1142
||||||||||||||| ||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct 1128 AGCTAAAAGAAAGGCCGCAACCGCAAAGGAAAAGGAGAAGCAGCTCAAACAGAAGTTGCA 1187
Query 1143 AGGTGATCTTGCCAAAGCCATTATGAAGAAAAACGGAGCTCCATTGTCCATTGAGGAACA 1202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 AGGTGATGTTGCCAAAGCCATTATGAAGAAAAACGGAGCTCCATTGTCCATTGAGGAACA 1247
Query 1203 CAATGAAATTCTGTCTCAAATAAGAGCTGAAGCTAAAGAAGCTCATGATGGAATGATGGA 1262
||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1248 CAACGCAATTCTGTCTCAAATAAGAGCTGAAGCTAAAGAAGCTCATGATGAAATGATGGA 1307
Query 1263 GGCAAAGGGCATAACATCTGGAATGACGCGTATATGTGATGCGCGTAGAACTGAACCAAT 1322
|||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1308 GGCAAAGGGCATGGCAGCTGGAACGACGCGTATATGTGATGCGCGTAGAACTGAACCAAT 1367
Query 1323 CATGGTGGAAGATAATGGTCTTGTTCTCTGGAAATTGAACTGCTATGATGAAGAACCAAA 1382
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1368 CATGGTGGAAGATAATGGTCTTGTTCTCTGGAAATTGAACTGCTATAAAGAAGAACCAAA 1427
Query 1383 GTTTTTGCTCCAAGATCTAGGAACATTTGATGGTTTATGTTCACATGAAAAATGGTTAGC 1442
|||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1428 TTTTTTGCTTCAAGATTTAGGAACATTTGATGGTTTATGTCCACATGAAAAATGGTTAGC 1487
Query 1443 TTTTAAGCCTGAGCAGAAACCAGATATAGAGAACTATATCTCTTACAAGAGGAGGAAGGT 1502
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1488 TTTTAAGCCTGAGCAGAAACCAGACATAGAGAACTATATCTCTTACAAGAGGAGGAAAGT 1547
Query 1503 GATGCAAA--CATTGAAGAACACAAATGTGGTAGCATAA 1539
|||||||| || |||||| |||| ||| | || ||||
Sbjct 1548 GATGCAAATGCA--GAAGAATACAATTGTAGAAGTATAA 1584
Score = 649 bits (351), Expect = 0.0
Identities = 387/405 (96%), Gaps = 0/405 (0%)
Strand=Plus/Plus
Query 22 GAGAAACCATCGAAGCGTACCACTAATCCCGGCGTTAGAGTCGTCGGAGGAAGAATCTAC 81
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 16 GAGAAACCATCGAAGCGCACCACTAATCCTGGTGTTAGAGTCGTCGGAGGAAGAATCTAC 75
Query 82 GATTCCAGTAATGGCAAAACCTGTCACCAGTGTCGACAGAAGACTATGGACTTCGTTGCG 141
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 76 GATTCCAGTAATGGCAAAACCTGTCACCAGTGTCGACAGAAGACGATGGACTTCGTTGCG 135
Query 142 TCTTGCAAGGCTATGAAGAAGGATAAGCAATGTACCATTAATTTTTGTCATAAGTGTTTA 201
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 136 TCGTGCAAGGCAATGAAGAAGGACAAGCAATGTACCATTAATTTTTGTCATAAGTGTTTA 195
Query 202 ATAAACAGGTATGGTGAGAATGCAGAAGAAGTAGCGAAGTTAGATGATTGGATATGTCCT 261
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||
Sbjct 196 ATAAACAGGTATGGTGAGAATGCAGAAGAAGTAGCAAAGTTGGATGACTGGATGTGTCCT 255
Query 262 CAGTGTAGAGGCATCTGCAATTGCAGTTTTTGCAGGAAGAAACGAGGACTAAATCCCACC 321
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 256 CAGTGTAGAGGCATCTGCAATTGCAGTTTTTGCAGGAAGAAACGAGGGCTAAATCCTACT 315
Query 322 GGGATATTGGCACACAAAGCTAAAGCTAGTGGATTAGCTTCAGTATCTATGCTTCTTGAA 381
|||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 316 GGGATATTAGCACACAAAGCTAAAGCCAGTGGATTAGCTTCGGTCTCTATGCTTCTTGAA 375
Query 382 GTTGAGGGGCATGATAACTTTGCTTATCAGAAGAAGCCAAAACTG 426
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 GTTGAGGGGCATGATAACTTTGCTTATCAGAAGAAGCCAAAACTG 420
> Ahg925969 jgi|Araly1|925969|scaffold_201530.1
Length=1336
Score = 259 bits (140), Expect = 4e-68
Identities = 184/205 (90%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 538 AAAGCC-AATGCCACTCACAAGCTGAAAGAGGAGATTCAGTTTGAGGCTCAACTTCCTCA 596
|||||| ||| ||| | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 495 AAAGCCAAAT-CCAGTGACAAACTGAAAGAGGAGATTCAGTTTGAGGCTCAACTTCCTCA 553
Query 597 GGGTATAAGCTTGATTTCTGTGTCAGGCGTTGTTATACCAACTGAAGAAGCTGGAAATGT 656
|||||||||||||| || ||| |||||| ||| ||||||| |||||||||||||||||||
Sbjct 554 GGGTATAAGCTTGACTTGTGTTTCAGGCATTGATATACCAGCTGAAGAAGCTGGAAATGT 613
Query 657 AT-TCCAGCTTTTCGAGTTTTGCTCAGCCTTTGGAAAGGCTCTTGAGTTGAAGGAAGGAC 715
|| || ||||||||||||||||||| || |||||||||| ||||| |||||||||| ||
Sbjct 614 ATGTC-AGCTTTTCGAGTTTTGCTCTGCTTTTGGAAAGGTTCTTGCTTTGAAGGAAGAAC 672
Query 716 AAGCTGAAACTGTTGTCCGTGAGCT 740
| ||||||||| |||||||||||||
Sbjct 673 ATGCTGAAACTATTGTCCGTGAGCT 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630540685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5