BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67780.1 Length=1539 Score E Sequences producing significant alignments: (Bits) Value Ahg475882 jgi|Araly1|475882|fgenesh2_kg.2__1012__AT1G67780.1 1709 0.0 Ahg925969 jgi|Araly1|925969|scaffold_201530.1 259 4e-68 > Ahg475882 jgi|Araly1|475882|fgenesh2_kg.2__1012__AT1G67780.1 Length=1584 Score = 1709 bits (925), Expect = 0.0 Identities = 1056/1119 (94%), Gaps = 9/1119 (1%) Strand=Plus/Plus Query 427 AATGATGATTCTATGGAAGGTAGTAGTGGCAATAGTGATTCTGTTTCGGGGACAGATGTT 486 |||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 469 AATGATGATTTTATGGAAGGTAGTAGTGGGAATAGTGATTCTGTTTCTGGGACAGATGTT 528 Query 487 GAAGTAGCTGATGTTGCCAAGGATAAGAAAAAAGTGGTGGGCAAGAGCAAGAAAGCCAAT 546 ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 529 GAAGTAGCTGATGTTGCCAAGGAGAATAAAAAAGTGGTGGGCAAGAGCAAGAAAGCCAAA 588 Query 547 GCCACTCACAAGCTGAAAGAGGAGATTCAGTTTGAGGCTCAACTTCCTCAGGGTATAAGC 606 |||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||| Sbjct 589 GCCACTCACAAGCTGAAAGAGGAGATTCAGTTTGAGGCTCAACTGCCACAGGGTCTAAGC 648 Query 607 TTGATTTCTGTGTCAGGCGTTGTTATACCAACTGAAGAAGCTGGAAATGTATTCCAGCTT 666 |||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 649 TTGAATTCTGTTTCAGGCATTGTTATACCAACTGAAGAAGCTGGAAATGTATTCCAGCTT 708 Query 667 TTCGAGTTTTGCTCAGCCTTTGGAAAGGCTCTTGAGTTGAAGGAAGGACAAGCTGAAACT 726 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 709 TTTGAGTTTTGCTCAGCCTTTGGAAAGGCTCTTGATTTGAAGGAAGGACAAGCTGAAACT 768 Query 727 GTTGTCCGTGAGCTCTTCTCATGTGGGCGTAACACAAGGAGACAACAATACTGCTCTATT 786 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 769 GTTGTTCGTGAGCTCTTCTCATGTGGGCGTAACACAAGGAGACAACAGTACTGCTCTATT 828 Query 787 ATCCAGCTGATGATCCAATTGTTGGATTTAATATCAAAGGATAGAGAGATGTCCTTGTCT 846 ||||||||||||||||||||||||||| |||||||| |||||||||| |||||| ||||| Sbjct 829 ATCCAGCTGATGATCCAATTGTTGGATCTAATATCACAGGATAGAGAAATGTCCCTGTCT 888 Query 847 CTAAGTGTGTCTGACA--A-TTGGTTCACTGCTCTTGGAGAGATCCTATTGCAGTCAGAA 903 |||||||| ||||||| | ||||||||||||||||||||||||| |||||||||||||| Sbjct 889 CTAAGTGTATCTGACAGCAGTTGGTTCACTGCTCTTGGAGAGATCTTATTGCAGTCAGAA 948 Query 904 GTTTTGAGTGATGAGTTCCCACCTGAAACTTTTGAAA-CAGGTGTTGCTGAGTATGAGAA 962 |||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 949 TTTTTGAGTGATGTGTTCCCACCTGAAACTTTT-AAAGTAGGTGTTGCTGAGTATGAGAA 1007 Query 963 GATGGATGCATCAAGAAGGCTCAAGCTTCTCAACTTCGTATGTGATGAATCACTTAGCAC 1022 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1008 GATGGATGCATCAAAAAGGCTCAAGCTTCTCAACTTTGTATGTGATGAATCACTTAGCAC 1067 Query 1023 TTGGGCAATGAGGAATTGCATTAAGAGCCAGAGTACAGAGTGTAAAGCAAATAACAACGA 1082 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1068 CTGTGCAATGAGGAATTGCATTAAGAGCCAGAGTACAGAGTGTAAAGCAAATAACAACGA 1127 Query 1083 AGCTAAAAGAAAGGCTGCAGCTGCAAAGGAAAAGGAGAAGCAGCTTAAACAGAAGTTGCA 1142 ||||||||||||||| ||| | ||||||||||||||||||||||| |||||||||||||| Sbjct 1128 AGCTAAAAGAAAGGCCGCAACCGCAAAGGAAAAGGAGAAGCAGCTCAAACAGAAGTTGCA 1187 Query 1143 AGGTGATCTTGCCAAAGCCATTATGAAGAAAAACGGAGCTCCATTGTCCATTGAGGAACA 1202 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1188 AGGTGATGTTGCCAAAGCCATTATGAAGAAAAACGGAGCTCCATTGTCCATTGAGGAACA 1247 Query 1203 CAATGAAATTCTGTCTCAAATAAGAGCTGAAGCTAAAGAAGCTCATGATGGAATGATGGA 1262 ||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1248 CAACGCAATTCTGTCTCAAATAAGAGCTGAAGCTAAAGAAGCTCATGATGAAATGATGGA 1307 Query 1263 GGCAAAGGGCATAACATCTGGAATGACGCGTATATGTGATGCGCGTAGAACTGAACCAAT 1322 |||||||||||| || |||||| |||||||||||||||||||||||||||||||||||| Sbjct 1308 GGCAAAGGGCATGGCAGCTGGAACGACGCGTATATGTGATGCGCGTAGAACTGAACCAAT 1367 Query 1323 CATGGTGGAAGATAATGGTCTTGTTCTCTGGAAATTGAACTGCTATGATGAAGAACCAAA 1382 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1368 CATGGTGGAAGATAATGGTCTTGTTCTCTGGAAATTGAACTGCTATAAAGAAGAACCAAA 1427 Query 1383 GTTTTTGCTCCAAGATCTAGGAACATTTGATGGTTTATGTTCACATGAAAAATGGTTAGC 1442 |||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1428 TTTTTTGCTTCAAGATTTAGGAACATTTGATGGTTTATGTCCACATGAAAAATGGTTAGC 1487 Query 1443 TTTTAAGCCTGAGCAGAAACCAGATATAGAGAACTATATCTCTTACAAGAGGAGGAAGGT 1502 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 1488 TTTTAAGCCTGAGCAGAAACCAGACATAGAGAACTATATCTCTTACAAGAGGAGGAAAGT 1547 Query 1503 GATGCAAA--CATTGAAGAACACAAATGTGGTAGCATAA 1539 |||||||| || |||||| |||| ||| | || |||| Sbjct 1548 GATGCAAATGCA--GAAGAATACAATTGTAGAAGTATAA 1584 Score = 649 bits (351), Expect = 0.0 Identities = 387/405 (96%), Gaps = 0/405 (0%) Strand=Plus/Plus Query 22 GAGAAACCATCGAAGCGTACCACTAATCCCGGCGTTAGAGTCGTCGGAGGAAGAATCTAC 81 ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| Sbjct 16 GAGAAACCATCGAAGCGCACCACTAATCCTGGTGTTAGAGTCGTCGGAGGAAGAATCTAC 75 Query 82 GATTCCAGTAATGGCAAAACCTGTCACCAGTGTCGACAGAAGACTATGGACTTCGTTGCG 141 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 76 GATTCCAGTAATGGCAAAACCTGTCACCAGTGTCGACAGAAGACGATGGACTTCGTTGCG 135 Query 142 TCTTGCAAGGCTATGAAGAAGGATAAGCAATGTACCATTAATTTTTGTCATAAGTGTTTA 201 || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 136 TCGTGCAAGGCAATGAAGAAGGACAAGCAATGTACCATTAATTTTTGTCATAAGTGTTTA 195 Query 202 ATAAACAGGTATGGTGAGAATGCAGAAGAAGTAGCGAAGTTAGATGATTGGATATGTCCT 261 ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||| Sbjct 196 ATAAACAGGTATGGTGAGAATGCAGAAGAAGTAGCAAAGTTGGATGACTGGATGTGTCCT 255 Query 262 CAGTGTAGAGGCATCTGCAATTGCAGTTTTTGCAGGAAGAAACGAGGACTAAATCCCACC 321 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 256 CAGTGTAGAGGCATCTGCAATTGCAGTTTTTGCAGGAAGAAACGAGGGCTAAATCCTACT 315 Query 322 GGGATATTGGCACACAAAGCTAAAGCTAGTGGATTAGCTTCAGTATCTATGCTTCTTGAA 381 |||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||| Sbjct 316 GGGATATTAGCACACAAAGCTAAAGCCAGTGGATTAGCTTCGGTCTCTATGCTTCTTGAA 375 Query 382 GTTGAGGGGCATGATAACTTTGCTTATCAGAAGAAGCCAAAACTG 426 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 376 GTTGAGGGGCATGATAACTTTGCTTATCAGAAGAAGCCAAAACTG 420 > Ahg925969 jgi|Araly1|925969|scaffold_201530.1 Length=1336 Score = 259 bits (140), Expect = 4e-68 Identities = 184/205 (90%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 538 AAAGCC-AATGCCACTCACAAGCTGAAAGAGGAGATTCAGTTTGAGGCTCAACTTCCTCA 596 |||||| ||| ||| | |||| |||||||||||||||||||||||||||||||||||||| Sbjct 495 AAAGCCAAAT-CCAGTGACAAACTGAAAGAGGAGATTCAGTTTGAGGCTCAACTTCCTCA 553 Query 597 GGGTATAAGCTTGATTTCTGTGTCAGGCGTTGTTATACCAACTGAAGAAGCTGGAAATGT 656 |||||||||||||| || ||| |||||| ||| ||||||| ||||||||||||||||||| Sbjct 554 GGGTATAAGCTTGACTTGTGTTTCAGGCATTGATATACCAGCTGAAGAAGCTGGAAATGT 613 Query 657 AT-TCCAGCTTTTCGAGTTTTGCTCAGCCTTTGGAAAGGCTCTTGAGTTGAAGGAAGGAC 715 || || ||||||||||||||||||| || |||||||||| ||||| |||||||||| || Sbjct 614 ATGTC-AGCTTTTCGAGTTTTGCTCTGCTTTTGGAAAGGTTCTTGCTTTGAAGGAAGAAC 672 Query 716 AAGCTGAAACTGTTGTCCGTGAGCT 740 | ||||||||| ||||||||||||| Sbjct 673 ATGCTGAAACTATTGTCCGTGAGCT 697 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57630540685 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5