BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G67785.1

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475883 jgi|Araly1|475883|fgenesh2_kg.2__1013__AT1G67785.1         351    8e-97


> Ahg475883 jgi|Araly1|475883|fgenesh2_kg.2__1013__AT1G67785.1
Length=223

 Score =  351 bits (190),  Expect = 8e-97
 Identities = 212/223 (95%), Gaps = 0/223 (0%)
 Strand=Plus/Plus

Query  1    ATGGTGAAGGTTTTGACTTACTTTGGGATGACATTGGCCGCTTTCGCCTTTTGGCAATCC  60
            ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGAAGGTTTTGACCTACTTTGGCATGACATTGGCCGCTTTCGCCTTTTGGCAATCC  60

Query  61   ATGGACAAAGTTCATGTCTGGATCGCTCTTCATCAAGACGAGAAGCAAGAAAGAATGGAG  120
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATGGACAAAGTCCATGTCTGGATCGCTCTTCATCAAGACGAGAAGCAAGAAAGAATGGAG  120

Query  121  AAGGAAGCGGAGGTAAGGCGAGTTAGAGCAGAGCTGCTACGGAAAGCTAGAGAGGAGGAT  180
            |||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||
Sbjct  121  AAGGAAGCGGAGGTAAGGCGGGTTAGAGCAGAGCTGATACGGAAAGCTAGAGAAGAGGAT  180

Query  181  CCACTTGCCTGATCTTCTTCTGCAGTCATGCTTTTGGGTGTCT  223
            || |||||||||||||||||| | || |||||||||||| |||
Sbjct  181  CCTCTTGCCTGATCTTCTTCTTCGGTTATGCTTTTGGGTTTCT  223



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7637652200


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5