BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67790.1
Length=1731
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315794 jgi|Araly1|315794|fgenesh1_pm.C_scaffold_2000827 2394 0.0
> Ahg315794 jgi|Araly1|315794|fgenesh1_pm.C_scaffold_2000827
Length=1755
Score = 2394 bits (1296), Expect = 0.0
Identities = 1608/1757 (92%), Gaps = 28/1757 (2%)
Strand=Plus/Plus
Query 1 ATGAATTTCCGACGCGACATCTCTGCTCTGAATGAAGACATCATAGTTGAGCAGCTACTT 60
|||||||||||| | ||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1 ATGAATTTCCGAAGTGACATCTCTGCCCTGAATGAAGACATCATAATTGAGCAGCTACTT 60
Query 61 CGTAGCCATGATCCAGACGGTCGCTGGCTTGATTCCGAAATGCTGCTTCAAGAAGTCGAA 120
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 CGTAGCCATGATCCTGACGGTCGCTGGCTTGATTCTGAAATGCTGCTTCAAGAAGTCGAA 120
Query 121 ACCATCTTAAGCTTTGTTCTGCAAAATGATGTTTCTA-GACCGCTTCTGACAGAGAATTG 179
|| ||||||||||||||||||||| ||||||| || | | |||||| |||||||||| ||
Sbjct 121 ACTATCTTAAGCTTTGTTCTGCAAGATGATGTATCAATG-CCGCTTATGACAGAGAACTG 179
Query 180 TATCACCACCATTGAAGTTTTTGACTCAAAGGAAACACTACCATACGCTATCTTCAGAAT 239
||| |||| ||||| ||||| ||| || | |||||||||||||||||||||| ||||||
Sbjct 180 TATTACCAACATTGTAGTTTCTGAATCGACGGAAACACTACCATACGCTATCACCAGAAT 239
Query 240 CTCCGTTCAGATGCTTTGTCCATGTACTGGGGAAAATGAGATCCGGAAAAGGACAATGGT 299
|||||||||||||||||||||||| |||||||||| ||| ||||||| ||| ||| ||||
Sbjct 240 CTCCGTTCAGATGCTTTGTCCATGCACTGGGGAAAGTGATATCCGGACAAGAACATTGGT 299
Query 300 TTTGTTTGATCTTCTCAAGGAATACAGATGGGATGCAAAAGCTGTGTTAGTACTAGGAGT 359
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTGTTTGATCTTCTGAAAGAATACAGATGGGATGCAAAAGCTGTGTTAGTACTAGGAGT 359
Query 360 CCTTGCCGCAACATATGGAGGACTATTGCTACCAGTTCATCTGGCCATCTGTGATCCCGT 419
|||||| ||||||||||||||| ||||||||||||||||||| ||| | ||||||||||
Sbjct 360 CCTTGCTGCAACATATGGAGGAATATTGCTACCAGTTCATCTAGCCTTGAGTGATCCCGT 419
Query 420 TGCAGCATCAATTGCAAAACTCAACCAGTTGCCTATTGAGAGAACCAAGTTCAGACCGTG 479
||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| ||
Sbjct 420 TGCAGCATCAATTGCAACACTCAACCAGTTTCCCATTGAGAGAACCAAGTTCAGACCATG 479
Query 480 GTTAGAGTCTCTAAACTTGCTCATTAAAGCCATGGTGGATGTAACCAAATGCATCATCAA 539
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 GTTAGAGTCTCTAAGCTTGCTCATTAAAGCCATGGTGGATGTAACCAAATGCATCATTAA 539
Query 540 ATTTGAAAAAATTCCATTTAAACAAGCGAAGCTAGACAACAACATTTTGGGAGAAACCTT 599
|||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 ATTTGAAAGACTTCCATTTAAACAAGCGAAGCTAGACAACAACATTGTGGGAGAAACCTT 599
Query 600 GTCTAACATCTATCTGACTACTTATCGGGTTGTCAAAAGTGCACTCACATGCATGCAGCA 659
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 600 GTCTAACATCTATCTGGCTACTTATCGGGTTGTCAAAAGTGCACTCGCATGCATGAAACA 659
Query 660 GATCCCTTATTTCAAGCAAACGCAGCAGATATCTATAACTGAGGTACAAGATAAGGTAAC 719
|||||||||||||||||||| |||| |||| ||||||||||| ||||||| |||||||
Sbjct 660 AATCCCTTATTTCAAGCAAACCCAGCGGATACCTATAACTGAGCTACAAGAAAAGGTAAT 719
Query 720 ACTACTGCTATTATCAAAGCCACCAGTAGAGCCACTTTTCTTCCTACTCCAACAGCTATA 779
||| |||||||||||||||||||| |||||||||||||||||||| || |||||| ||||
Sbjct 720 ACTGCTGCTATTATCAAAGCCACCCGTAGAGCCACTTTTCTTCCTGCTTCAACAGTTATA 779
Query 780 CGATCATCCATCTAACACCAACACAGAACAAAACTACGAGATCATATGGGTTCCAATACC 839
||||||||| || |||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 780 CGATCATCCTTCCAACACCAACACAGAACAAAACTACGAAATCCTATGGGTTCCAATACC 839
Query 840 ATCATCCCAAAAATGGACAGACGAAGAGAAAGAAATCTTCGATTTCTACTCCAATTCCTT 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 840 ATCATCCCAAAAATGGACAGACGAAGAGAAAGAAATCTTCGATTTCTACTCCAATTCCCT 899
Query 900 ACCATGGATCTCAGTAAGGCAACCATGGTTGATGAGCTCCACAATACTCAACTTTTTCAA 959
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 ACCATGGATCTCAGTAAGGCAACCATGGTTGCTGAGCTCCACAATACTCAACTTTTTCAA 959
Query 960 ACAAGAATGGCATTATAAAGATAACGAAGCAATGTTGGTTGTTATCGATTCTAACGGGAG 1019
|| ||||||||||||| ||| ||||||||||| |||| || |||||| ||||||||||
Sbjct 960 ACGAGAATGGCATTATGGAGACGACGAAGCAATGGTGGTAGTGATCGATCCTAACGGGAG 1019
Query 1020 GTTCGTCAACATGAATGCCATGGATATGGTGTTGATTTGGGGTGTTAAAGCATATCCATT 1079
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1020 GTTCGTGAACATGAATGCCATGGATATGGTGTTGATATGGGGTGTTAAAGCATATCCATT 1079
Query 1080 CTCAGTTTCTAGAGAAGATGAGCTTTGGAAAGAACATGGATGGTCTAT-CAATCTCTTGC 1138
||||||||| |||||| ||||||| ||| ||||||||||||||||||| || |||||||
Sbjct 1080 CTCAGTTTCCAGAGAAAATGAGCTCTGGGAAGAACATGGATGGTCTATGCAG-CTCTTGC 1138
Query 1139 TTGATGGAATTCATCCTACATTTGAA----GG---AA-GA-G-A-GA----TCTGCATAT 1183
| ||||||||||||||| |||||||| || || || | | || |||||||||
Sbjct 1139 TCGATGGAATTCATCCTTCATTTGAAACCTGGGTGAAAGAAGGAAGAGAAATCTGCATAT 1198
Query 1184 TCGGAAGCGAGAATTTGGATTGGATTGACGAATTTGTGTCACTAGCGAGAAAAATTCAAA 1243
||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||
Sbjct 1199 TCGGAAGCGAGAATTTGGATTGGGTTGATGAATTTGTGTCACTAGCAAGAAAAATTCAAA 1258
Query 1244 ACCTAGGGTTCCAGTTAGAGCTGATTTACCTAAGCAACCA--G-AGACGAGACGAGCG-- 1298
| ||||||||||| ||||||||||||||||| || || || | ||| ||||||||||
Sbjct 1259 ATCTAGGGTTCCAATTAGAGCTGATTTACCTTAGTAATCAAAGGAGAAGAGACGAGCGTG 1318
Query 1299 -A---GCCATGGAAGAGAGCTCAATTTTGTTCAGTCCTACATTGCAACAGCTCTTCTGGC 1354
| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1319 CAAAAGCCATGGAAGAGAGCTCAATCTTGTTCAGTCCTACATTGCAACAACTCTTCTGGC 1378
Query 1355 TCCGATTAGAAAGCATCGAAAGATCAAAACTCAAGCGGATTGTAATTGAACCATCGAAAC 1414
||||||||||||| |||||| |||| ||||||||||| |||| |||||| ||||||||
Sbjct 1379 TCCGATTAGAAAGTATCGAACGATCCAAACTCAAGCGAATTGGGATTGAATCATCGAAAT 1438
Query 1415 CTGATCGTGTTTTTGAAGAAGTTAGGAACCTTCTCGACTTCGATTACGGGAAACATAGAG 1474
|||||||||||||||||||||||| ||| ||||||||||||||||| || ||||| | ||
Sbjct 1439 CTGATCGTGTTTTTGAAGAAGTTACGAAACTTCTCGACTTCGATTATGGTAAACACAAAG 1498
Query 1475 GTTGGGGAATCATTGGGAATGGATCAACTGCGGAGACGGTTGATGGAGAGAAGATGACGG 1534
||||||| | ||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 1499 GTTGGGGTGTTATTGGAAAAGGATCAACGGCGGAGACGGTTGATGGAGAGAAGATGACGG 1558
Query 1535 AGAGGATGAGAAAGATTGTGCGGTGGGGAGAGTATGCGAAGGGGTTGGGTTTTACGGAGG 1594
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1559 AGAGGATGAGGAAGATTGTGCGGTGGGGAGAGTATGCGAGGGGGTTGGGTTTTACGGAGG 1618
Query 1595 CGATTGAGATTGCGGCGGAGAAGCCGTGTGAACTGAGTCACACGGCGGTTGTTCCGTTTG 1654
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1619 CGATTGAGATTGCGGCGGAGAAGCCGTGTGAACTGAGTCACACGGTGGTTGTTCCGTTTG 1678
Query 1655 AAGAAGCGTTGACGATGAAAGTTGTCACGTGCGAGAAATGTAAGTGGCCAATGAAGAGGT 1714
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 AAGAAGCGTTGACGAGGAGAGTTGTCACGTGCGAGAAATGTAAGTGGCCAATGAAGAGGT 1738
Query 1715 TTGTTGCATATCAGTAA 1731
||||||| |||||||||
Sbjct 1739 TTGTTGCGTATCAGTAA 1755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64943867725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5