BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67810.1
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475889 jgi|Araly1|475889|fgenesh2_kg.2__1019__AT1G67810.1 1186 0.0
> Ahg475889 jgi|Araly1|475889|fgenesh2_kg.2__1019__AT1G67810.1
Length=777
Score = 1186 bits (642), Expect = 0.0
Identities = 736/781 (94%), Gaps = 8/781 (1%)
Strand=Plus/Plus
Query 1 ATGAACACTTCATCGTCCTTCAAGGCCCTTGCTTCTCCTCCTTTGATTTCTACCTCTAGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACACTTCATCGTCCTTCAAGGCCCTTGCTTCTCCTCCTTTGATTTCTACCTCTAGA 60
Query 61 CCAACAACAAAATCTTTCCCAAACCCAAGATTCACTTCAAGATTCTCTCCTAAACCCATT 120
||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 61 CCAACAAGAAAATCTTTCCCTAACCCAAGATT---TTCAAGATTCTCTCCTAAACCCATC 117
Query 121 ACATGCATGCGCGATTCTCTTAATCTTGGCTCGAATCCAAAAGCTCCAAGCCCTTTTTCT 180
||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||
Sbjct 118 ACATGCATGCGCGATTCTCTTAATCTTGGTTCGAATCCAAACGCTCCAAGCCCTCTTTCT 177
Query 181 TTGGCAACGGTTTCGGTTGATGCTCCTTTGGGAACAAAAACCTCCGACAAGCTTCGCATC 240
|| ||||||||||| ||||| ||||| || |||||||||||| |||||||||||||||||
Sbjct 178 TTCGCAACGGTTTCCGTTGAAGCTCCATTAGGAACAAAAACCACCGACAAGCTTCGCATC 237
Query 241 CTCGTATCCGAGTTCCGGTCCTTAACCGAACCTATCGACCGTGTAAAACGTCTCTTAAAC 300
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 238 CTCGTATCTGAGTTCCGGTCCTTAACCGAACCGATCGACCGTGTAAAACGTCTCTTGAAC 297
Query 301 TACGCAGCAACTCTAGCCCCGCTCGATGAGTCGGCTCGCATCTCCGAGAACCGAGTCA-C 359
||||| || ||||||||||||| ||||| ||||||||| |||||| ||||||||||| |
Sbjct 298 TACGCGGCGGCTCTAGCCCCGCTTGATGACTCGGCTCGCGTCTCCGCGAACCGAGTCACC 357
Query 360 GGGATGTACGACTCAAGTGTGGTTAGAGATAAAGATGGATGAGTTTGGGAGGATGAGGTT 419
||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 GGG-TGTACGACTCAGGTTTGGTTGGAGATAAAGATGGATGAGTTTGGGAGGATGAGGTT 416
Query 420 TAAAGCAGACAGTGATTCGGAGATCTCGAAAGGGTTTTGTTCTTGTCTTATCTGGATCCT 479
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 417 TAAAGCAGACAGTGATTCGGAGATCTCAAAAGGGTTCTGTTCTTGTCTGATCTGGATCCT 476
Query 480 AGACGGTGCTAAGCCAGAGGAAGTGATGGGCGTGAGAAGCGAGGACTTGTCGGAGATGAA 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CGACGGTGCTAAGCCAGAGGAAGTGATGGGCGTGAGAAGCGAGGACTTGTCGGAGATGAA 536
Query 540 CGTTGGGGTTCACGGCAAGGAACAGTCAAGGGTTAACACGTGGCACAACGTGTTGATGAG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CGTTGGGGTTCACGGCAAGGAACAGTCAAGGGTTAACACGTGGCACAACGTGTTGATGAG 596
Query 600 TATGCAGAAACGGACCATGACTCTAGTTGCTACTGACGTGGCGCATCAAAGAGGACAAAG 659
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 597 TATGCAGAAACGGACCATGACTCTAGTTGCTGCTGACGTGGCGCACCAAAGAGGACAAAG 656
Query 660 ACCACCGC---ACCAACATGATCTCTTATTTAAATACGTTAATGGAAGTTACATGGAATC 716
|||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ACCACCGCGTGATCAGCATGATCTCTTATTTAAATACGTTAATGGAAGTTACATGGAATC 716
Query 717 TTCTAAGGTTCATGATTATTCCATTTCGTTGCTTCCTTTGTATTATGATTTTATTATATG 776
||||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||||||
Sbjct 717 TTCTAAGGTTCATGATTATTCTATTTCGTTGCTTCCCTTGTACTATGATTTTACTATATG 776
Query 777 A 777
|
Sbjct 777 A 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31908881529
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5