BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67820.1
Length=1447
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339024 jgi|Araly1|339024|fgenesh1_pg.C_scaffold_2001123 1327 0.0
> Ahg339024 jgi|Araly1|339024|fgenesh1_pg.C_scaffold_2001123
Length=1296
Score = 1327 bits (718), Expect = 0.0
Identities = 1018/1155 (88%), Gaps = 52/1155 (5%)
Strand=Plus/Plus
Query 248 AAAGGTCTCGCCTTTAAAGAGAAAGAGACCTGCCCACCTAAATATCCCTGACCTCAATCC 307
||||||||||||||| ||||||||||||||| |||| || |||||||||| | | |
Sbjct 147 AAAGGTCTCGCCTTTGAAGAGAAAGAGACCTCCCCATTTAGATATCCCTGA-C-C--T-- 200
Query 308 TCAACAACCGA-TTCGAACTGATTACTTCAGTTTCACAGACTTTGCTCACCAAAACGGCA 366
| |||||| ||| ||| |||||||||||| ||| |||||||||||| ||||||| |
Sbjct 201 T---GAACCGACTTC-AACAGATTACTTCAGTGTCAGAGACTTTGCTCAGCAAAACGACG 256
Query 367 CCGTA--A-GCTTCGGTGGCAATGGTTTTGGTGTCGTCTCCAGAAACGGTAAGAAGAAGT 423
||||| | |||||||||| |||||||| ||||| |||||||||||||| ||||||||||
Sbjct 257 CCGTAGTATGCTTCGGTGGTAATGGTTTCGGTGTTGTCTCCAGAAACGGAAAGAAGAAGT 316
Query 424 TTATGGAAGATACTCACAGAATTGTTCCTTGTTTGGTTGGTAACTCCAAAAAGAGTTTCT 483
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 317 TTATGGAAGATACTCACAGAATTGTCCCTTGTTTGGTTGGTAGCTCCAAAAAGAGTTTCT 376
Query 484 TTGGAGTTTATGATGGTCATGGAGGTGCTAAAGCTGCAGAATTTGTGGCTGAGAATTTGC 543
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 377 TTGGAGTTTATGATGGTCATGGAGGTGGGAAAGCTGCGGAATTTGTGGCTGAGAATTTGC 436
Query 544 ACAAATATGTTGTTGAGATGATGGAGAATTGTAAGGGGAAGGAGGAGAAAGTTGAAGCCT 603
| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 437 ATAAACATGTTGTTGAGATGATGGAGAATTGTAAGGAGAAGGAGGAGAAAGTTGAAGCCT 496
Query 604 TTAAGGCTGCTTTTTTGAGGACTGATCGTGATTTCCTAGAAAAGGGTGTTGTGAGTGGTG 663
|||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 497 TTAAAGCTGCTTATTTGAGGACTGATCGTGATTTCTTAGAAAAGGGTGTTGTGAGTGGTG 556
Query 664 CTTGCTGTGTTACTGCTGTGATACAAGATCAGGAGATGATTGTATCAAATTTGGGAGATT 723
||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||
Sbjct 557 CTTGCTGTGTTACTGCTTTGATACAAGATCAAGAGATGATTGTATCGAATTTGGGAGATT 616
Query 724 GTAGAGCTGTCCTGTGTAG-AGCAGGTGTTGCTGAGGCTCTTACTGATGATCACAAACCA 782
||||||||||||||||| | || ||| |||||||| ||||||||| |||||||||| ||
Sbjct 617 GTAGAGCTGTCCTGTGTCGAAG-AGGCGTTGCTGAAGCTCTTACTAATGATCACAAGGCA 675
Query 783 GGAAGGGATGATGAAAAGGAAAGAATTGAGAGTCAGGGAGGTTATGTCGATAATCATCAA 842
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |
Sbjct 676 GGAAGGGATGATGAAAAGGAAAGAATTGAGAGTCAGGGAGGTTATGTTGATATTCACCGA 735
Query 843 GGGGCTTGGCGAGTTCAGGGAATACTTGCGGTTTCCAGAAGCATTGGAGATGCACACTTA 902
|| |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 736 GGAGCTTGGCGAGTTCATGGAATACTCGCTGTTTCCAGAAGCATTGGAGATGCACACTTA 795
Query 903 AAGAAGTGGGTGGTTGCTGAACCTGAGACGAGAGTACTAGAACTGGAACAAGATATGGAG 962
|||||||||||||||| ||||||||| || ||| || | ||| |||||||||||||||||
Sbjct 796 AAGAAGTGGGTGGTTGTTGAACCTGATACAAGAATAGTTGAATTGGAACAAGATATGGAG 855
Query 963 TTTCTTGTCTTAGCTTCTGATGGACTTTGGGATGTGGTTAGCAATCAAGAAGCTGTTTAT 1022
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 856 TTTCTTGTCTTAGCTTCTGATGGACTTTGGGATGTGGTTAGTAATCAAGAAGCTGTTGAT 915
Query 1023 ACCGTGTTGCATGTTCTAGCTCAGAGAAAGACGCCTAAAGAAAGTGAGGAGGAGAACTTG 1082
|||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 916 ACCGTGCTGCATGTTCTAGCTCAGAGAAAGACACCTAGAGAAAGTGAGGAGGAGAACTTG 975
Query 1083 GTTCAGGGCTTTGTCAATATGAGCCCATCTTCGAAACTTCGTCGAGCTTCACTGGTCAAG 1142
|||||||| |||||||| ||||||||||||||||||||||||| | ||| |||||||||
Sbjct 976 GTTCAGGGAGTTGTCAATGTGAGCCCATCTTCGAAACTTCGTCGGGTTTCGCTGGTCAAG 1035
Query 1143 TC-TC----C---C----AGATGTGCTAAATCCCAAAGTTACTACTACAACTCAGAGAAT 1190
|| || | | |||||||| ||||||| |||||||||||||| ||||||||||
Sbjct 1036 TCATCAGTTCAATCTCCCAGATGTGCGAAATCCCCAAGTTACTACTACACCTCAGAGAAT 1095
Query 1191 GAATCACCCTCACTCAACCGTGAAATAGGGAGTTCACCTTCAAAGTCACCGAT-A--ACA 1247
||||||||||||| | || ||||||| ||||||||||||||||| ||| || | |||
Sbjct 1096 GAATCACCCTCACCCCACTGTGAAATCGGGAGTTCACCTTCAAATTCAATGAAGATCACA 1155
Query 1248 C--------CG--TG--GA--A-GTC----TCTT-T-GGGCCAAAGCGGCTTGCAAAGAG 1286
| || || || | ||| |||| | ||||||| | ||||||||||||
Sbjct 1156 CAGTTGAAGCGAATGAAGATGAAGTCCGAGTCTTCTTGGGCCAAGGAGGCTTGCAAAGAA 1215
Query 1287 CTTGCGAACCTGGCTGCAAAAAGAGGCAGTATGGATGATATCACAGTGGTGATAATTGAT 1346
|| ||||||||||| | ||||||||| |||||||||||||| ||||||||| | || |||
Sbjct 1216 CTCGCGAACCTGGCCGTAAAAAGAGGTAGTATGGATGATATAACAGTGGTGGTTATAGAT 1275
Query 1347 CTCAACCATTACAAA 1361
|||||||| ||||||
Sbjct 1276 CTCAACCACTACAAA 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54126238145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5