BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67830.1
Length=1256
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475890 jgi|Araly1|475890|fgenesh2_kg.2__1020__AT1G67830.1 1735 0.0
> Ahg475890 jgi|Araly1|475890|fgenesh2_kg.2__1020__AT1G67830.1
Length=1209
Score = 1735 bits (939), Expect = 0.0
Identities = 1118/1206 (93%), Gaps = 5/1206 (0%)
Strand=Plus/Plus
Query 4 TCTTTAGCTTTACCAATGAATCCAATCCTATCTTCTTTGTTTGCTCTCTCTTTGCTTTCT 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTTAGCTTTACCAATGAATCCAATCCTATCTTCTTTGTTTGCTCTCTCTTTGCTTTCT 60
Query 64 TCACTATCACCATCAACACATGC--CC-ATCAATGCCATTTCCCAGCAATCTTTAACTTT 120
||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 61 TCACTATCATCATCAACACATGCTGCCCATCAATGCCATTTCCCAGCAATCTTTAACTTT 120
Query 121 GGTGACTCTAACTCCGATACCGGCGGTCTCTCCGCTGCTTTTGGCCAAGCTGGTCCTCCT 180
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 121 GGTGACTCAAACTCCGATACCGGTGGTCTCTCCGCAGCTTTTGGCCAAGCTGGTCCTCCT 180
Query 181 CACGGCTCTTCCTTCTTCGGCTCACCCGCGGGACGATACTGCGATGGTCGCCTCGTCATT 240
|| |||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||
Sbjct 181 CATGGCTCTTCCTTCTTCGGCTCACCCGCCGGAAGATACTGCGACGGTCGTCTCGTCATT 240
Query 241 GACTTCATAGCGGAGAGTCTTGGATTACCATATCTAAGCGCGTTTCTAGACTCCGTTGGT 300
|||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 241 GACTTCATAGCGGAGAGTCTTGAATTGCCATATCTAAGCGCGTTTCTAGACTCGGTTGGT 300
Query 301 TCAAACTTCAGCCACGGCGCTAACTTCGCTACCGCGGGATCTCCGATAAGAGCTCTTAAC 360
||||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||| |||
Sbjct 301 TCAAACTTCAGCCACGGTGCTAACTTCGCGACGGCGGGGTCTCCTATAAGAGCTCTCAAC 360
Query 361 TCTACTCTACGTCAAAGTGGATTCAGCCCATTTTCACTCGATGTACAGTTCGTACAATTC 420
|||||||| ||||||||||||||||||||||||||||||||||| ||||| || || |||
Sbjct 361 TCTACTCTTCGTCAAAGTGGATTCAGCCCATTTTCACTCGATGTTCAGTTTGTCCAGTTC 420
Query 421 TATAACTTCCACAACAGATCTCAAACTGTTCGTAGTCGTGGAGGAGTCTACAAGACAATG 480
|| ||||||||||||||||| ||||||||||||||||| |||||| |||| | ||| |||
Sbjct 421 TACAACTTCCACAACAGATCCCAAACTGTTCGTAGTCGCGGAGGAATCTATACGACGATG 480
Query 481 TTGCCTGAATCCGACAGCTTCTCAAAAGCTTTGTACACTTTTGACATTGGTCAGAACGAT 540
||||||| | | ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 TTGCCTGGAGCAGACTTCTTCTCACAAGCTTTGTACACTTTTGACATTGGTCAGAACGAT 540
Query 541 CTCACAGCAGGTTACTTCGCTAATAAAACCGTAGAACAAGTTGAAACCGAAGTTCCTGAG 600
|||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 CTCACAGCCGCTTACTTCGCTAATAAAACCGTGGAACAAGTTGAAACCGAAGTTCCTGAG 600
Query 601 ATCATAAGTCAGTTCATGAATGCTATCAAGAATATTTATGGACAAGGAGGGAGATACTTC 660
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCATCAGTCAGTTCAAGAATGCTATCAAGAATATTTATGGACAAGGAGGGAGATACTTC 660
Query 661 TGGATTCATAACACTGGACCTATTGGTTGTTTAGCTTATGTGATTGAACGGTTTCCGAAT 720
|||||||| |||||||||||||||||||||||| | |||||||| ||| ||||||||| |
Sbjct 661 TGGATTCACAACACTGGACCTATTGGTTGTTTACCGTATGTGATCGAATGGTTTCCGATT 720
Query 721 AAAGCATCAGACTTTGATTCACATGGATGTGTTTCTCCTTTGAACCACTTAGCTCAACAA 780
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 721 AAAGCATCAGACTTTGATTCACATGGATGTCTTTCTCCGTTGAACCACTTAGCTCAACAA 780
Query 781 TTCAATCACGCTTTGAAACAAGCTGTGATCGAGCTAAGAAGTTCTCTATCTGAAGCAGCC 840
|||||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||| |||
Sbjct 781 TTCAATTACGCTTTGAAACAAGCTGTGACCGAGCTAAGAAGTTCGCTAGCTGAAGCCGCC 840
Query 841 ATCACTTATGTAGATGTCTACTCTCTCAAGCATGAGTTGTTTGTTCACGCTCAGGGTCAC 900
|||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 841 ATCAGTTATGTAGATGTCTACTCTGTCAAGCATGAGTTGTTTCTTCACGCTCAGGGTCAC 900
Query 901 GGGTTTAAGGGATCGTTGGTTTCGTGTTGTGGACATGGAGGGAAGTATAACTACAACAAG 960
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGGTTCAAGAGATCGTTGGTTTCGTGTTGTGGACATGGAGGGAAGTATAACTACAACAAG 960
Query 961 GGTATCGGATGTGGGATGAAGAAGATTGTGAAAGGTAAAGAGGTTTACATTGGAAAGCCG 1020
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGCATTGGGTGTGGGATGAAGAAGATTGTGAAAGGTAAAGAGGTTTACATTGGAAAGCCA 1020
Query 1021 TGCGATGAGCCTGATAAGGCTGTTGTGTGGGACGGTGTACACTTCACGCAGGCTGCTAAC 1080
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1021 TGCGATGAGCCTGAGAAGGCCGTTGTGTGGGACGGTGTGCACTTCACGCAGGCTGCTAAC 1080
Query 1081 AAATTCATTTTCGATAAGATTGCTCCAGGGTTAAGCAAGGCCTGTAAAAGGCAGTGACAA 1140
||||| || ||||||||||| || ||| | || |||| ||||||| |||| |||||||||
Sbjct 1081 AAATTTATCTTCGATAAGATCGCGCCAAGATTGAGCATGGCCTGTCAAAGACAGTGACAA 1140
Query 1141 CAAGAAGAAACAAGCTTTTCTTCTTTTTATGAGTTTGTTTCTATGATT-TCTTAGACAGG 1199
||||||||||||||||||||||||||||||||||||||||| | | ||||||| |||
Sbjct 1141 TAAGAAGAAACAAGCTTTTCTTCTTTTTATGAGTTTGTTTCTTTTAAGCTCTTAGAAAGG 1200
Query 1200 -AAACA 1204
|||||
Sbjct 1201 GAAACA 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46929310827
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5