BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67856.1
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475894 jgi|Araly1|475894|fgenesh2_kg.2__1024__AT1G67856.1 743 0.0
> Ahg475894 jgi|Araly1|475894|fgenesh2_kg.2__1024__AT1G67856.1
Length=544
Score = 743 bits (402), Expect = 0.0
Identities = 506/554 (91%), Gaps = 15/554 (3%)
Strand=Plus/Plus
Query 33 GAAGAGGGCGAAAGACTCTAGAAACAG-AAACAGTATCTA-TAGGAAGAAGAATGGGTAT 90
||||||||| ||||||||||||||||| |||||||||| | ||| ||||||||||||| |
Sbjct 1 GAAGAGGGCCAAAGACTCTAGAAACAGAAAACAGTATC-AGTAGCAAGAAGAATGGGTCT 59
Query 91 TTCTCATTACCCGACAGCGTCTGAAGGAGTGA-TGCCAATGCTAGTAATGAACACAGTTG 149
|||||||||||| ||||||||||||||||| | |||||||||| || |||||||||||||
Sbjct 60 TTCTCATTACCCAACAGCGTCTGAAGGAGT-AGTGCCAATGCTGGTGATGAACACAGTTG 118
Query 150 TTTCAGTGTCTCTAGTAAAGAACATGGTAAGATCTGTTGTCAACATGGTGAGCTCTGAGA 209
||||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 119 TTTCAGTGTCTGTCTTTAAGAACATGGTAAGATCTGTTCTCAACATGGTGAGCTCTGAGA 178
Query 210 CCAATGAGGCAAGGAACAAAGAGGACGACCAAGATCATGAGGATTCAAAAAGAAGAAGAA 269
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 179 CCAATGAGGCAAGGAACATAGAGGACGACCAAGCTCATGAGGATTCAAAAAGAAGAAGAA 238
Query 270 GAATCTCAATCACACACTTTGAATCTCTGTGTGAGAACAGAGGAAGCAGGAACGAGAGAG 329
||||||| | |||||||||| | |||| ||||||||||||||||| | |||||||||
Sbjct 239 GAATCTCTGTAACACACTTTGGA--TCTG-CTGAGAACAGAGGAAGCAAGCACGAGAGAG 295
Query 330 AAGCTATGGACTGTTGTGTGTGTCTTTGTGGGTTTAAAGAGGAGGAAGAGGTGAGTGAGT 389
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 296 AAGCTATGGAGTGTTGTGTGTGTCTGTGTGGGTTTAAAGAGGAGGAAGAGGTGAGTGAGT 355
Query 390 TAGTGTCCTGCAAGCATTACTTTCACTCAGCTTGTTTGGATAAATGGTTTGGTAATAACC 449
|||||||||||||||||||||||||| | ||||| | |||||||||||| ||||| |||
Sbjct 356 TAGTGTCCTGCAAGCATTACTTTCACACTGCTTGCCTAGATAAATGGTTTAGTAATGACC 415
Query 450 ACACAACTTGTCCTCTCTGCAGATCCATCCTTTAGACTTTCCTTTTATGGCTTTTCAC-A 508
|||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
Sbjct 416 ACACCACTTGTCCTCTCTGCAGATCCATTCTTTAGACTTTCCTTTGATGGCTTTTCACCA 475
Query 509 AtttttttttAAATGTTTTCTAGTTTCTATTTTGGGAAACTCAG-ATTCTGTTGTGTCCA 567
||||||| || ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 476 ATTTTTT---AA-TGTTTTCTAGTTTCTATTTTGGGAAACTC-GTATTCTGTTGTGTCCA 530
Query 568 CTTTGTGGGTTTTG 581
|||| |||||||||
Sbjct 531 CTTTCTGGGTTTTG 544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22530643947
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5