BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G67860.1

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926057 jgi|Araly1|926057|scaffold_201618.1                        230    9e-60


> Ahg926057 jgi|Araly1|926057|scaffold_201618.1
Length=247

 Score =  230 bits (124),  Expect = 9e-60
 Identities = 152/165 (92%), Gaps = 4/165 (2%)
 Strand=Plus/Plus

Query  85   AAAATGCTTGATACGCTTATTGGAGGGATTGTCGGAGGGATTGCCGGAGCGATTATTGGA  144
            |||||| |||| | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  18   AAAATGTTTGACAAGCTTATTGGAGGGATTGTCGGAGGGATTGCCGGAGCGATTATCGGA  77

Query  145  ACGGTGGATGGGTTCGCCAGAGGGATCGGAATATGCCCCGATAGTTACCAGAGCTGCA-C  203
            |||||||||||||||||||||||| |||||||||||||||| | |||||||||||||| |
Sbjct  78   ACGGTGGATGGGTTCGCCAGAGGGGTCGGAATATGCCCCGAAACTTACCAGAGCTGCAAC  137

Query  204  TCGT-ACCGACTGCGAGGAGCACAAAAAGAAGCTCCCGACCAACC  247
             ||| || ||||||||||||||||||||||||| |||| ||||||
Sbjct  138  -CGTCAC-GACTGCGAGGAGCACAAAAAGAAGCCCCCGGCCAACC  180



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16597681215


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5