BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67865.1
Length=449
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926058 jgi|Araly1|926058|scaffold_201619.1 313 8e-85
Ahg926059 jgi|Araly1|926059|scaffold_201620.1 265 2e-70
> Ahg926058 jgi|Araly1|926058|scaffold_201619.1
Length=273
Score = 313 bits (169), Expect = 8e-85
Identities = 242/276 (88%), Gaps = 9/276 (3%)
Strand=Plus/Plus
Query 31 GTAGATAAATATAAAGAAAAATGCTTGATAAGCTTATTATTGGGGTTGCCGGAGGGATTA 90
||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1 GTAGATATATATAAAGAAAAATGTTTGATAAGCTTATCGGAGGGGTTGCCGGAGGGATTA 60
Query 91 CCGGAGGGATTCTTGGAACGGTCGATGGGTTTGCCAAAGGGGTCGGGA-TATGGCCCAAT 149
||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct 61 CCGGAGGGATTATTGGAACGGTCGATGGGTTTGCCAAAGGGGTC-GGAGTATGGCCCAGT 119
Query 150 AATTATCAGAGCACCGGTC--G-CTTCGA-GAACAACAATATGACGAGTCCGGGAAACTA 205
||||| ||||||||||||| | |||||| || | |||||| |||| |||||| ||| |
Sbjct 120 AATTACCAGAGCACCGGTCGTGTCTTCGAGGAGC-ACAATAAGACGCGTCCGGCCAACGA 178
Query 206 CGGCAATGGTAATGGCGGTGCAGTGAAGGCATCCGAGAACTCCGGCGGCCGCCGCCAGAA 265
||||||| ||| |||||||| |||||| | | ||||||||| |||||||||||||||||
Sbjct 179 TGGCAATGATAACGGCGGTGCGGTGAAGCCTTGCGAGAACTCTGGCGGCCGCCGCCAGAA 238
Query 266 AGACAGGGAGTAAAGGACTCCTG-ACCACACCCAGT 300
|||||||||||||||||||| || | | ||||||||
Sbjct 239 AGACAGGGAGTAAAGGACTC-TGGAACGCACCCAGT 273
> Ahg926059 jgi|Araly1|926059|scaffold_201620.1
Length=313
Score = 265 bits (143), Expect = 2e-70
Identities = 257/310 (83%), Gaps = 16/310 (5%)
Strand=Plus/Plus
Query 35 ATAAATATAAAGAAAAATGCTTGATAAGCTTATTATTGGGGTTGCCGGAGG-GATTACCG 93
||| ||||||||||||||||||||||||||||| || ||||||||||| | || |||
Sbjct 5 ATATATATAAAGAAAAATGCTTGATAAGCTTATCGGAGGAGTTGCCGGAGGAG-TTGCCG 63
Query 94 GAGGGATTCTTGGAACGGTCGATGGGTTTGCCAAAGGGGTCGGGAT-ATGGCCCAATAAT 152
|||| ||| ||||||||||||||||||| || | ||||| ||| || ||| |||||||||
Sbjct 64 GAGGTATTATTGGAACGGTCGATGGGTTCGCTAGAGGGGCCGG-ATTATGCCCCAATAAT 122
Query 153 TATCAGAGCACCGGTCGC---TTCGAGAA-CAACAATATGACGAGTCCGGGAAACTACGG 208
| ||| ||| ||||||| |||||||| || ||||| | || |||| | ||| | ||
Sbjct 123 AACCAGGGCAACGGTCGCCGCTTCGAGAATCA-CAATAAGCCGCGTCCCGTCAACCATGG 181
Query 209 CAATGGTAATGGCGGTGCAG---TG---AAGGCATCCGAGAACTCCGGCGGCCGCCGCCA 262
||||||||| |||||||||| || ||| | || ||||||| |||||| ||||||||
Sbjct 182 CAATGGTAACGGCGGTGCAGCAGTGGTGAAGCCTTCGGAGAACTGCGGCGGTCGCCGCCA 241
Query 263 GAAAGACAGGGAGTAAA-GGACTCCTGACCACACCCAGTAATGATTATGTATCCAAAATA 321
||||||||||||||||| ||||||| |||| ||||||||||||| |||||||| |||||
Sbjct 242 GAAAGACAGGGAGTAAAAGGACTCCAGACCGTACCCAGTAATGATGATGTATCCTAAATA 301
Query 322 ATAAATGTAT 331
||||||||||
Sbjct 302 ATAAATGTAT 311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16216125325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5