BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67870.1
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926061 jgi|Araly1|926061|scaffold_201622.1 544 7e-154
Ahg926060 jgi|Araly1|926060|scaffold_201621.1 124 1e-27
> Ahg926061 jgi|Araly1|926061|scaffold_201622.1
Length=924
Score = 544 bits (294), Expect = 7e-154
Identities = 639/797 (80%), Gaps = 58/797 (7%)
Strand=Plus/Plus
Query 50 AAGTATAAATTTACAGAAAAATGCTTGATAAGCTTACCAGAGGGATCGGAGGTCTCCGGC 109
||||||| ||||| |||||||||||||||||||||||| | || | ||| || |||
Sbjct 1 AAGTATATATTTAAAGAAAAATGCTTGATAAGCTTACC--A--GA---G-GGT-TCGGGC 51
Query 110 GCGGACATGGGCATTTCCAGGCAAG-CGCAGGCTTCGGGTTCGAGGAGCACAAGGAGTTT 168
| |||| ||| | | ||| |||| |||||||||||||||||||||||||||||
Sbjct 52 ACAGACACGGG-------A-G-AAGCCGCA-GCTTCGGGTTCGAGGAGCACAAGGAGTTT 101
Query 169 -TCGAGTCGTGTGGAGTCATCAGGAGGCTTCGTTGACCGTCAAGCCCGCTACAACCACCG 227
| || || | |||||||| |||| ||||| ||||||||||||||||| | | |
Sbjct 102 GT-GACTCATATGGAGTCAGAAGGAAGCTTCTTTGACCGTCAAGCCCGC-ATGA--GGCT 157
Query 228 TACGGGCAACCATGGCCGTCCACCCAT-G----CA----TGTCTGGGATGAAGAAGACTC 278
| ||| ||||||||||||||||||||| | || |||||| ||||||||||||||
Sbjct 158 TCCGGCCAACCATGGCCGTCCACCCATGGCTCACATGCCTGTCTGCGATGAAGAAGACTC 217
Query 279 AGACTCAGACGTGGAGGAGTTCTTTGAGAGCAGCCGGACCCAACACACTACTGCGTTGCC 338
||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 218 AGACTCAGATGTGGAGGAGTTCTTCGAGAGAAGCCGGACCCACCACACTACTGCGTTGCC 277
Query 339 GCAACCACTTCATATGAACTTCAGGCCTCCACCTCCAGTGACTCAGCCTCACCACAACGG 398
||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 278 GCAACCACTTCATCTGAACTTCAGGCCTCCACCTCCAGTGACTCAGCCTCACCATAATGG 337
Query 399 AAAAATGGGAAAGATAGGTAATGGATTG--CAGCAGG--GA--CA--CGA-G-ATA-CAT 447
|| ||||| || | || |||| | | || || | || || | | | | ||
Sbjct 338 GAAGATGGGTAA--T-GG-AATGC-TGGGACAACATGAAGATGCATTCCATGGAGGGCAC 392
Query 448 GGGATGAAGCACCAGGGCGGACATGGGATCCAGCACCACGACATACACGGGAtgcagcac 507
|||||| ||||||| || ||||||||||| || ||||| | | |||||||||||| |||
Sbjct 393 GGGATGCAGCACCACGGTGGACATGGGATGCAACACCATGGCGGACACGGGATGCAACAC 452
Query 508 cagggcgggcacgggatgcagcaccagggc-atgcacgggatgcagcaccagggggggCA 566
|| | || |||||||||||||||||| | ||| || ||||| ||||| || | |||
Sbjct 453 CACAACATACATGGGATGCAGCACCAGGGCGA-GCATGGAATGCAACACCAAGGAGAGCA 511
Query 567 CGGAATGCAGCACCAGGGCGGGCACGGAATGCAGCACCA-GGGCATGCATGGGATGCAGC 625
||| ||||||| || ||||||||||| ||||||||||| ||| | ||| | ||| |||
Sbjct 512 CGGGTTGCAGCATCAAGGCGGGCACGGGATGCAGCACCAAGGGGA-GCACAGAATGAAGC 570
Query 626 ACCAgggggggCACGGAATGGAGCACCA-GGGCGGGCACGGAATGCAGCACCAGGACATG 684
||||||| |||||||||||| ||||||| ||| |||||||||||||||||||||| | |
Sbjct 571 ACCAGGGTGGGCACGGAATGCAGCACCAAGGG-GGGCACGGAATGCAGCACCAGGTCGGG 629
Query 685 CATGGGATGCAGCACCAGGGCAGGCACGGAATGCAGCACCAGGGCGGGCACGAAATGCAG 744
|| | |||| |||||||| || ||||| || ||||||||||||||||||||| || ||||
Sbjct 630 CACGAGATGAAGCACCAGAGCGGGCACAGACTGCAGCACCAGGGCGGGCACGGAAGGCAG 689
Query 745 CATCAGGGCATGCATGGGATGCAGCACCAGGGCGGGCACAGAATACAGCATCAGGGCATG 804
|| |||||| ||| | |||| ||||||||| |||||| |||| |||||||||||| |
Sbjct 690 CACCAGGGCGGGCACGAGATGAAGCACCAGGATGGGCACGGAATGCAGCATCAGGGCGGG 749
Query 805 CATGGGA-TGCAGCACC 820
|| || | |||| ||||
Sbjct 750 CACGG-ACTGCAACACC 765
Score = 448 bits (242), Expect = 6e-125
Identities = 397/471 (84%), Gaps = 14/471 (3%)
Strand=Plus/Plus
Query 468 ACATGGGATCCAGCACCACGACATA-CACGGGAtgcagcaccagggcgggcacgggatgc 526
||||||||| |||||||| | | | || || ||||| ||||| || | ||||||| |||
Sbjct 461 ACATGGGATGCAGCACCAGGGC-GAGCATGGAATGCAACACCAAGGAGAGCACGGGTTGC 519
Query 527 agcaccagggcatgcacgggatgcagcaccagggggggCACGGAATGCAGCACCAGGGCG 586
|||| || ||| |||||||||||||||||| |||| |||| ||||| |||||||||| |
Sbjct 520 AGCATCAAGGCGGGCACGGGATGCAGCACCAAGGGGAGCACAGAATGAAGCACCAGGGTG 579
Query 587 GGCACGGAATGCAGCACC-AGGGCATGCATGGGATGCAGCACCAgggggggCACGGA-AT 644
|||||||||||||||||| |||| ||| || ||||||||||||| |||||| || ||
Sbjct 580 GGCACGGAATGCAGCACCAAGGG-GGGCACGGAATGCAGCACCAGGTCGGGCAC-GAGAT 637
Query 645 GGAGCACCAGGGCGGGCACGGAATGCAGCACCAGGACATGCATGGGATGCAGCACCAGGG 704
| |||||||| |||||||| || |||||||||||| | ||| || | ||||||||||||
Sbjct 638 GAAGCACCAGAGCGGGCACAGACTGCAGCACCAGGGCGGGCACGGAAGGCAGCACCAGGG 697
Query 705 CAGGCACGGA-ATGCAGCACCAGGGCGGGCACGAAATGCAGCATCAGGGCATGCATGGGA 763
| ||||| || ||| ||||||||| ||||||| |||||||||||||||| ||| |||
Sbjct 698 CGGGCAC-GAGATGAAGCACCAGGATGGGCACGGAATGCAGCATCAGGGCGGGCA-CGGA 755
Query 764 -TGCAGCACCAG-GGCGGGCACAGAATACAGCATCAGGGCATGCATGGGATGCAGCACCC 821
|||| |||||| || |||||| || |||| || |||||| ||| |||||||||||||
Sbjct 756 CTGCAACACCAGAGG-GGGCACGGACTACAACACCAGGGCGGGCACGGGATGCAGCACCA 814
Query 822 GGGTGGAGTAGTGGTAAACGCTACTGAGAATTGGCGGGTCAGCAAAATCACCGGCCAGAA 881
|| ||||||||||| || |||||||||||||||||||| ||||||| || |||||||||
Sbjct 815 AGGCGGAGTAGTGGTGAAGGCTACTGAGAATTGGCGGGTGAGCAAAAGCAGCGGCCAGAA 874
Query 882 ACTCGGGT-GGGGAGGTAAGGGACTCTAGACTCCACCTAAATACTATGCCG 931
|||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 875 ACTCGGGTGGGGGA-GTAAGGGACTCTAGACTCCACCTAAATACTATGCCG 924
> Ahg926060 jgi|Araly1|926060|scaffold_201621.1
Length=597
Score = 124 bits (67), Expect = 1e-27
Identities = 77/82 (94%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 252 CATGCATGTCTGGGATGAAGAAGACTCAGACTCAGACGTGGAGGAGTTCTTTGAGAGCAG 311
||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 62 CATGCCTGTCTGCGATGAAGAAGACTCAGACTCAGATGTGGAGGAGTTCTTTGAGAGCAG 121
Query 312 CCGGACCCAACACACTACTGCG 333
||||| ||| ||||||||||||
Sbjct 122 CCGGAGCCACCACACTACTGCG 143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42316437870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5