BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67880.1
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926062 jgi|Araly1|926062|scaffold_201623.1 1849 0.0
> Ahg926062 jgi|Araly1|926062|scaffold_201623.1
Length=1214
Score = 1849 bits (1001), Expect = 0.0
Identities = 1145/1216 (94%), Gaps = 4/1216 (0%)
Strand=Plus/Plus
Query 263 GAGTTCTTGTTCGAAGAAAGATGTGGTGGATGATGGGAGAAAACGGTGGTCACTACTGTT 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGTTCTTGTTCGAAGAAAGATGTGGTGGATGATGGGAGAAAACGGTGGTCACTACTGTT 60
Query 323 CTAAAAAGTCCGATGATTTATGCGGAACTCAGGAATCAGATCGAGGCTTTGGTATTTCAA 382
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAAAAAGTCTGATGATTTATGCGGAACTCAGGAATCAGATCGAGGCTTTGGTATTTCAA 120
Query 383 GACTCTGTTGTATCTTGCGTGGTGTGGATTTAAAATCGGTTCTGTTTCTGTTAGTAATCA 442
||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||||||
Sbjct 121 GACTCTGTTGTATCTTGCGTGGTGTTGATTTTAAATCGATTCTGTTTCTTTTAGTAATCG 180
Query 443 TGCCAATGTGTGTTCTTGGTGTATACATTAACGCTCTCAAGATTTCATATTTCTTGAGAC 502
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TACCAATGTGTGTTCTTGGTGTATACATTAACGCTCTCAAGATTTCATATTTCTTGAGAC 240
Query 503 CTTTATGGGAATCACCACCAAAACCATTCCATGAGATACCGCATTATCACCACGAGAACG 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTTATGGGAATCACCACCAAAACCATTCCATGAGATACCGCATTATCACCACGAGAACG 300
Query 563 CTTCTATGGAATCTCTCTGTAAACTCCACGGTTGGAGAACCCGTGAGTACCCTCGTCGTG 622
|||||||||||||||| ||||||||||| || ||| ||| |||||||||||||||||||
Sbjct 301 CTTCTATGGAATCTCTTTGTAAACTCCATGGCTGGGGAATACGTGAGTACCCTCGTCGTG 360
Query 623 TCTACGACGCTGTTTTGTTCAGTACTGAAGTTGAACTCCTCACGATACGGTGGAAAGAAC 682
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 TCTACGACGCTGTTTTGTTCAGTACTGAAGTTGAACTTCTCACGATACGGTGGAAAGAAC 420
Query 683 TGTACCCATATGTTACTCAGTTTGTTCTACTTGAATCTAACTCGACTTTCACCGGATTAC 742
|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 421 TGTATCCATATGTTACTCAGTTTGTTCTGCTTGAGTCTAACTCGACTTTCACCGGATTAC 480
Query 743 CAAAACCGCTTGTTTTCGCGGGGCATAGGGATGAGTTTAAGTTTATCGAGCCACGGTTGA 802
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 CTAAACCGCTTGTTTTCGCGGGGCATAGGGATGAGTTTAAGTTTATTGAGCCACGGTTGA 540
Query 803 CTTACGGGTCGATAGGAGGAAGGTTTAAGAAAGGTGAGAAGAATCCTTTTTACGAAGAGG 862
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 CTTACGGGTCGATAGGAGGAAGGTTTAAGAAAGGAGAGAAGAATCCTTTTTACGAAGAGG 600
Query 863 CTTATCAAAGAATCGCATTGGATCAGCTATTGAGAATAGCTGGTATCACTGATGATGACT 922
| ||||| |||||||||||||||||||| |||||||| || ||||| || |||||||| |
Sbjct 601 CCTATCAGAGAATCGCATTGGATCAGCTTTTGAGAATTGCGGGTATTACCGATGATGATT 660
Query 923 TG-TTGATTATGTCTGATGTTGATGAGATTCCGAGTAGACATACGATAAATCTTCTCCGT 981
|| || |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 661 TGCTT-ATTATGTCTGATGTTGATGAGATTCCAAGCAGACATACGATAAATCTTCTCCGT 719
Query 982 TGGTGCGATGACATACC-ACAAATTCTTCATCTTAGACTGAAGAATTACTTGTACTCTTT 1040
||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||| ||
Sbjct 720 TGGTGCGATGACATACCGA-AAATCCTTCACCTTAGACTGAAGAATTACTTGTACTCGTT 778
Query 1041 TGAGTTCCCTGTTGATGATAAGAGCTGGAGAGCATCGGTGCATAGATACCAGACGGGTAA 1100
||||||||| |||||||| ||||| ||||||||||| || ||||| |||||||| |||||
Sbjct 779 TGAGTTCCCGGTTGATGACAAGAGTTGGAGAGCATCAGTTCATAGGTACCAGACTGGTAA 838
Query 1101 AACAAGGTATGCGCATTATCGACAGTCTGATGTTATCTTGGCGGATTCAGGGTGGCATTG 1160
||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 839 AACGAGGTATGCGCATTATAGACAGTCTGATGTGATCTTGGCGGATTCAGGGTGGCATTG 898
Query 1161 CAGTTTCTGTTTTAGACGTATAAGCGAGTTTGTGTTTAAGATGAAAGCTTATAGTCATTA 1220
||| |||||||| ||||| ||||||||||||||||| || ||||||||||||||||| ||
Sbjct 899 CAGCTTCTGTTTCAGACGGATAAGCGAGTTTGTGTTCAAAATGAAAGCTTATAGTCACTA 958
Query 1221 TGATCGAGTGAGATTCGCGCATTACTTGAACCCGAAAAGGGTTCAAAGAGTTATATGCAG 1280
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CGATAGAGTGAGATTCGCGCATTACTTGAACCCGAAAAGGGTTCAAAGAGTTATATGCAG 1018
Query 1281 CGGATCGGATTTGTTCGATATGATTCCCGAGGAATACACGTTTAAAGACATCATTGGTAA 1340
|||| ||||| | ||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 1019 CGGAGCGGATCTCTTCGACATGATTCCCGAGGAATACACGTTTAAAGACATCATCGGGAA 1078
Query 1341 AATGGGACCGATCCCGCATTCTTACTCCGCGGTTCATCTTCCGGCGTACCTTTTAGAGAA 1400
|||||| || |||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 1079 AATGGGTCCTATCCCGCATTCTTATTCCGCGGTTCATCTTCCGGCGTACCTACTGGAGAA 1138
Query 1401 CGCGGAGAGGTACAAGTTTCTTCTTCCGGGGAACTGTTTGAGAGATGAGGAATGAATTGG 1460
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1139 TGCAGAGAGGTACAAGTTTCTTCTTCCGGGGAACTGCTTGAGAGATGAGGAATGAATTGG 1198
Query 1461 TTATTGTAACTAATAT 1476
|||||||||||||||
Sbjct 1199 CTATTGTAACTAATAT 1214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60525399305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5