BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G67910.1

Length=672
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926065 jgi|Araly1|926065|scaffold_201626.1                        429    1e-119
  Ahg914217 jgi|Araly1|914217|Al_scaffold_0001_4471                    233    1e-60 


> Ahg926065 jgi|Araly1|926065|scaffold_201626.1
Length=351

 Score =  429 bits (232),  Expect = 1e-119
 Identities = 277/298 (93%), Gaps = 5/298 (2%)
 Strand=Plus/Plus

Query  151  ATGGAGAAGGTGCAACAAATGACAAACAACAAAGGAATCATGAAGGTTGAAATTCATAGC  210
            ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||
Sbjct  55   ATGGAGAAGGTGCAACAAATGACAAACGACAAAGGAATCATGAAGATTGAAATTCTTGGC  114

Query  211  CATTTCAATTCTGCGGTGGAAGTGGGTTCCCGTGGGCTATCTCGTCAGACAAGCATGACC  270
             ||  ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct  115  GATGGCAATTCTGCGGCGGAAGTGGGTTCCCGTGGGCTATCCCGTCAGACAAGCATGACC  174

Query  271  AAGACCAACTGCCTTTGCTCACCAACCACTCACCCTGGTTCTTTCCGGTGTAGGATTCAC  330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  175  AAGACCAACTGCCTTTGCTCACCAACCACTCACCCTGGTTCTTTCCGGTGTAGGATTCAC  234

Query  331  CGTTCTCTTTCGTTGCAACGTACCAAGAGTATCGAGGCTGCATCTCTATTGGATTCTCCA  390
            || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct  235  CGGTCTCTTTCGTTGCAACGTACCAAGAGTATGGAAGCTGCATCTCTATTGGATTCTCCA  294

Query  391  CCAAAGCCAGCGGATTCCCCTAGTACCGC--T--ACATAGATTCATGCATGAATCCAT  444
            || ||||||||||||||||||||| ||||  |  | ||||||| ||| ||||||||||
Sbjct  295  CCCAAGCCAGCGGATTCCCCTAGTGCCGCGCTCTAAATAGATTTATG-ATGAATCCAT  351


> Ahg914217 jgi|Araly1|914217|Al_scaffold_0001_4471
Length=150

 Score =  233 bits (126),  Expect = 1e-60
 Identities = 141/148 (95%), Gaps = 2/148 (1%)
 Strand=Plus/Plus

Query  265  ATGACCAAGACCAACTGCCTTTGCTCACCAACCACTCACCCTGGTTCTTTCCGGTGTAGG  324
            |||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||
Sbjct  1    ATGACCAAGACCAACTGCCTTTGCTCACCAACCACTCATCATGGTTCTCTCCGGTGTAGG  60

Query  325  ATTCACC-GTTCTCTTTCGTTGCAACGTACCAAGAGTATCGAGGCTGCATCTCTATTGGA  383
            ||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  61   ATTCACCAGT-CTCTTTCGTTGCAACGTACCAAGAGTATCGAAGCTGCATCTCTATTGGA  119

Query  384  TTCTCCACCAAAGCCAGCGGATTCCCCT  411
            ||||||||| ||||||||||||||||||
Sbjct  120  TTCTCCACCCAAGCCAGCGGATTCCCCT  147



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24665527299


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5