BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67920.1 Length=597 Score E Sequences producing significant alignments: (Bits) Value Ahg926066 jgi|Araly1|926066|scaffold_201627.1 409 1e-113 > Ahg926066 jgi|Araly1|926066|scaffold_201627.1 Length=247 Score = 409 bits (221), Expect = 1e-113 Identities = 236/243 (97%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 165 TTTGGTCTCGTGTTTGTGTAGAGATGGAGAACAAGACCGATAATGGAAACGAGGATGGTC 224 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1 TTTGGTCTCGTGTTTGTGTAGAGATGGAGAACAAGACAGATAATGGAAACGAGGATGGTC 60 Query 225 CAATAATACATAGCCAAGTTGAGAAGATAAAGAAAGAGTTTGAGAAGATAA-GACAACCG 283 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 61 CAATAATACATAGCCAAGTTGAGAAGATAAAGAAAGAGTTTGAGAAGATAAGGA-AACCA 119 Query 284 TCGCTGCAGCAACCGGAGATGAGGAGGGTTCTTAGCGAGATCAAAAGGCGTCAACGTTCA 343 |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 120 TCGCTGCAACAACCGGAGATGAGGAGGGTACTTAGCGAGATCAACAGGCGTCAACGTTCA 179 Query 344 CGTTCTCCTCTTGGTTTAGGGGAGAGATCTATTTCCGTTGGGAATTGATCCATGTTTGAC 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CGTTCTCCTCTTGGTTTAGGGGAGAGATCTATTTCCGTTGGGAATTGATCCATGTTTGAC 239 Query 404 TTT 406 ||| Sbjct 240 TTT 242 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21863152497 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5