BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67920.1
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926066 jgi|Araly1|926066|scaffold_201627.1 409 1e-113
> Ahg926066 jgi|Araly1|926066|scaffold_201627.1
Length=247
Score = 409 bits (221), Expect = 1e-113
Identities = 236/243 (97%), Gaps = 2/243 (1%)
Strand=Plus/Plus
Query 165 TTTGGTCTCGTGTTTGTGTAGAGATGGAGAACAAGACCGATAATGGAAACGAGGATGGTC 224
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 TTTGGTCTCGTGTTTGTGTAGAGATGGAGAACAAGACAGATAATGGAAACGAGGATGGTC 60
Query 225 CAATAATACATAGCCAAGTTGAGAAGATAAAGAAAGAGTTTGAGAAGATAA-GACAACCG 283
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 61 CAATAATACATAGCCAAGTTGAGAAGATAAAGAAAGAGTTTGAGAAGATAAGGA-AACCA 119
Query 284 TCGCTGCAGCAACCGGAGATGAGGAGGGTTCTTAGCGAGATCAAAAGGCGTCAACGTTCA 343
|||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 120 TCGCTGCAACAACCGGAGATGAGGAGGGTACTTAGCGAGATCAACAGGCGTCAACGTTCA 179
Query 344 CGTTCTCCTCTTGGTTTAGGGGAGAGATCTATTTCCGTTGGGAATTGATCCATGTTTGAC 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGTTCTCCTCTTGGTTTAGGGGAGAGATCTATTTCCGTTGGGAATTGATCCATGTTTGAC 239
Query 404 TTT 406
|||
Sbjct 240 TTT 242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21863152497
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5