BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67950.3
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475932 jgi|Araly1|475932|fgenesh2_kg.2__1062__AT1G67950.2 1483 0.0
> Ahg475932 jgi|Araly1|475932|fgenesh2_kg.2__1062__AT1G67950.2
Length=1014
Score = 1483 bits (803), Expect = 0.0
Identities = 939/1003 (94%), Gaps = 15/1003 (1%)
Strand=Plus/Plus
Query 172 GGCTGCTTTCATTGATTCGGATCAAACTCAGC-ACAACATTCTTATGGATTCCCAATCAA 230
|||||||||||||||||||||||||||||| | |||||||||| |||||||| || ||||
Sbjct 21 GGCTGCTTTCATTGATTCGGATCAAACTCA-CAACAACATTCTAATGGATTCACAGTCAA 79
Query 231 CTGTCTCCGGTGTGAAAACTGTCAAGATTAGCAATGTTTCACTAATTGTTTCTAAGAAAG 290
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 80 CTGTCTCCGGTGTGAAAACTGTCAAGATAAGCAATGTTTCACTACTTGTTTCTAAGAAAG 139
Query 291 ATGTCAAAGAGTTCTTTTCTTTCTCTGGTGACATTCAATACGTCGAGATGCGAAGTGAGA 350
|||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 140 ATGTTAAAGAGTTCTTTTCTTTCTCTGGTGACATTCAGTTCGTCGAGATGCGAAGTGAGA 199
Query 351 CACAAGAGAGTC-AGGTCGCATATGTTACTTTTAAGGATTCACAAGGAGCTGAAACTGCA 409
||||||| |||| || | || |||||||||||||||||| | ||||| || ||||||||
Sbjct 200 CACAAGAAAGTCAAGCT-GCTTATGTTACTTTTAAGGATCCTCAAGGCGCACAAACTGCA 258
Query 410 ATGCTCTTAACGGGAGCTGTCATTGCAGATCTTCGTGTTAGTATAACTCCTGCTGTTAAC 469
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 259 ATGCTCTTAACGGGAGCGGTCATTGCAGATCTTCGTGTTAGTATTACTCCTGCTGTTAAC 318
Query 470 TATC-AGCTACCACCAGAAGCCCTTGCACTTGACTCGCAGGAACA-TTCGTTTAATGGTT 527
|| | |||| ||||||||||||||||||||||||| | |||| | ||||||||| ||||
Sbjct 319 TA-CGAGCTGCCACCAGAAGCCCTTGCACTTGACT--C-GGAA-AGTTCGTTTAACGGTT 373
Query 528 TTTCTGTCAAGAAAGCTGAAGATGTGGTGAACATCATGGTGGGAAGAGGTTATGCTCTTG 587
| ||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 374 TCACTGTCAAGAGAGCTGAAGATGTGGTGAATATCATGGTGGGAAGGGGTTATGCTCTTG 433
Query 588 GAAAAGACGCCATGGAGAAAGCCAAAGCATTTGATGACAGACACAACTTGATCTCAAACG 647
|||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 434 GAAAAGACGCTATGGAGAAAGCCAAAGCGTTCGACGACAGACACAACTTGATCTCAAACG 493
Query 648 CTTCTGCAACCATTGCATCGCTTGACGATAAGATGGGTCTGAGCGAAAAGCTAAGCATAG 707
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 CTTCAGCAACCATTGCCTCGCTTGACGATAAGATGGGTCTGAGCGAAAAGCTAAGCATAG 553
Query 708 GAACAACTGTGGTTAATGAGAAGTTGAGAGATATCGATGAGCGATATCAGGTGAGGGAGA 767
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 554 GAACTACTGTGGTGAATGAGAAGTTGAGAGATATCGATGAGCGTTATCAGGTGAGGGAGA 613
Query 768 TAACGAAATCTGCTTTAGCAGCTGCTGAAGAGACAGCAATCAGTGCAAGAACGGCTTTAA 827
||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 614 TAACGAAATCTGCTTTAGCAGCTGCAGAAGAGACAGCAATCAGTGCCAGAACAGCTTTAA 673
Query 828 TGGCAAACCCTTATGTATCAAGTGGAGCTTCGTGGTTTTCAAACGCGTTTGGCGCAGTGA 887
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 TGGCAAACCCTTACGTATCAAGTGGAGCTTCGTGGTTTTCAAACGCGTTTGGCGCAGTGT 733
Query 888 CAAAGGCGGTTAAAGAGAAAGTTGAGAATGGAGGAGAAGGAAGAAAGGAGATCATCACAC 947
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 734 CAAAGGCGGTTAAAGAGAAAGTTGAGAATGGGGGAGAGGGAAGAAAGGAGATCATCACAC 793
Query 948 TTGATCCCTCTTCACCCAAAGTTCCTGCTGTAGTTCCTGTTAAGCTCGGTTGATGCAGAT 1007
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 794 TTGATCCCTCTTCACCTAAAGATCCTGCTGTAGTTCCTGTTAAGCTCGGTTGATGCAGAT 853
Query 1008 CTCATCAAACCAATCGGATCTCGACTAAATTCTTTGATAGGTTTGTTGTTCATATATATG 1067
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 CTCATTAAACCAATCGGATCTCGACTAAATTCTTTGATAGGTTTGTTGTTCATATATATG 913
Query 1068 CTTTCGTATGCTAAAGAGAAGATAAAAAGACATAAACCATGAAAGGTGTTGTTACATTCA 1127
||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||
Sbjct 914 CTTTCGTATGCTAAAGA-AAGATAAAAATACATAAACCATAAAAGGTGTTGTTACATTCA 972
Query 1128 -ACCAGCATTT-GTTCCTCTCTTGAAAGAGATTATTAAGATTC 1168
|| ||||||| |||||||||| ||||| |||||||||||||
Sbjct 973 GAC-AGCATTTTGTTCCTCTCTCAAAAGAAATTATTAAGATTC 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43688862882
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5