BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67960.1
Length=2117
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475928 jgi|Araly1|475928|fgenesh2_kg.2__1058__AT1G67960.1 3306 0.0
> Ahg475928 jgi|Araly1|475928|fgenesh2_kg.2__1058__AT1G67960.1
Length=2078
Score = 3306 bits (1790), Expect = 0.0
Identities = 2000/2097 (95%), Gaps = 32/2097 (2%)
Strand=Plus/Plus
Query 1 GGTTTTCGATTTCGTGAATCCAATTTTTGTGTGTATGTATTCGCTTCGTCTCTCCATTTT 60
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1 GGTTTCCGATTTCGTGAATCCAATTTTTGTTTGTATGTATTCGCTTCGTCTCTCCATTGT 60
Query 61 TCTTCGTCTTACGTTTACGTAATCC-AATGGCGATTAGATCCTCGGGAAGAAAACTATCA 119
||||| || ||||| ||||||| || |||||||||||||||||||||||||||||||||
Sbjct 61 TCTTCCTCATACGTATACGTAACCCAAATGGCGATTAGATCCTCGGGAAGAAAACTATCG 120
Query 120 TTTGAGATTCTCAGCCAAAACAGCTCCTTTGAGAATGATGATACATCAATTCGCCGATCC 179
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTGAGATTCTCAGCCGAAGCAGCTCCTTTGAGAATGATGATACATCAATTCGCCGATCC 180
Query 180 AGCTCAGATCCAATTACCGGAAACGTA-GCTTCAGAATCACCTAGAGACTACGGGAAACg 238
|||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 181 AGCTCAGATCCAATCACCGGAAACG-ACGCTTCTGAATCACCTAGAGACTACGGGAAACG 239
Query 239 aaagagatcgaagaagaagaagaagaa-agTGAACCAAGTCGAGACTATTCTAGAGAATG 297
||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 240 AAAGAGATCGAAGAAGAAGAAGAAGAACA-ACAACAAAGTCGAGACTATTCTAGAGAATG 298
Query 298 GAGATTCTCATTCAACGATCATCACCGGTTCAAGTGGTGATTTTGGAGAGACTACAACGA 357
| |||||||||||||||||| ||| | | ||||| |||||||||||||||||||
Sbjct 299 GTGATTCTCATTCAACGATCGTCA-C----C----GGTGACTTTGGAGAGACTACAACGA 349
Query 358 TGTTTGAGAACAGATTGAATTACTAtggtggtggtggtagtggtagtagtggtggtggtT 417
|||||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||
Sbjct 350 TGTTTGAGAACAGATTGAATTACTATGGCGGTGGTGGTGGTGGTAGCA---GTGGTGGTT 406
Query 418 GTGTCGTGACTCTATTAGATGGGCAAACTGTTCATCATAATGGGTTCAATTTTGGTGAGT 477
|||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 407 GTGTGGTGACGCTATTAGATGGACAAACTGTTCATCATAATGGGTTCAATTTTGGTGAGT 466
Query 478 TAAGGCAGAGGAATGTTAATGGTAGTGTTGATGGGAGTAATGATGAGCGGTGGTCTGATA 537
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 467 TAAGGCAGAGGAATGTTAATGGGAGTGTTGATGGGAGTAATGATGAGCGGTGGTCTGATA 526
Query 538 CTTTGAGTTCTGATAAGAAGTTATATATGGAGGAGACTAGTGTGGAGCTAAGCCCTTCTG 597
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 527 CTATGAGTTCTGATAAGAAGTTATATGTGGAGGAGACTAGTGTGGAGCTAAGCTCTTCTG 586
Query 598 AGAATCCACCGTTTCAAGAAGTGCAGCATCAGTTTCCAAGAAGTGAGATTAATGGGAATG 657
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 587 AGAATCCACCGTTTCAAGAAGTGCAGCATCAGTTTCCAAGAAGTGAGGTTAATGGGAATG 646
Query 658 TGGTTAGGAGATTAGATACAGAAGCTTCTTTGGATTGGAAACAGCTTGTGGCTGATGACC 717
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 647 TGGTGAGGAGATTAGATACAGAAGCTTCTTTGGATTGGAAACAGCTTGTGGCTGATGATC 706
Query 718 CTGATTTTCTTTCTGCTGAGACGAGGTCACCTATGAAATACTTTATGGAGGAAATTTATG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 CTGATTTTCTTTCTGCTGAGACGAGGTCACCTATGAAATACTTTATGGAGGAAATTTATG 766
Query 778 GTGGGATCTCATTACGGAGCACAACGACTCCTGGGAATGATATCGAGCGCGAAAGAATAT 837
||||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 767 GTGGGATTTCATTACGGAGCACAACGACTCCTGGGAATGATATAGAACGCGAAAGGATAT 826
Query 838 ATGATACAATCTTCCGTTTGCCATGGCGATGTGAAGTGCTTATAGATACTGGCTTTTTTG 897
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 827 ATGATACGATCTTCCGTTTGCCTTGGCGATGTGAAGTGCTTATAGATACTGGCTTTTTTG 886
Query 898 TCTGCGTCAACTCATTTCTGTCATTGTTGACAGTCATGCCAATAAGAGTCCTGCTGATAT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 TCTGCGTCAACTCATTTCTGTCATTGTTGACAGTCATGCCAATAAGAGTCCTGCTGATAT 946
Query 958 TTATGGATGCATTTAAGAACAGGCAGTTCAGGAGGCCCT-CTGCATCGGAGCTGTCTGAT 1016
||||||||||| ||||||||||||||||||||||||||| || |||||||| | ||||||
Sbjct 947 TTATGGATGCAATTAAGAACAGGCAGTTCAGGAGGCCCTCCT-CATCGGAGTTTTCTGAT 1005
Query 1017 CTGGCTTGTTTTCTAGTTTTGGCCACTGGTACCATTCTTCTCGGGAGAACAGATATCAGC 1076
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1006 CTTGCTTGTTTTCTAGTTTTGGCTACTGGTACCATTCTTCTCGGGAGAACAGATATCAGC 1065
Query 1077 CTAATTTACCACATGATTCGTGGTCAAAGTACCATAAAACTCTATGTGGTTTATAATATC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 CTAATTTACCACATGATTCGTGGTCAAAGTACCATAAAACTCTATGTGGTTTATAATATC 1125
Query 1137 TTAGAGATATTTGATAGACTCTGTCAAAGTTTTTGTGGAGATGTATTTGGAGCCCTATTC 1196
|||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 1126 TTAGAGATATTTGATAGACTATGTCAAAGTTTTTGTGGAGATGTATTCGGGGCCCTATTT 1185
Query 1197 AGTTCTGCAAAGGGACTGTCGATTTCTCCTCCTGAGAAACTGAGATTTTCGACTTGGAGA 1256
|||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1186 AGTTCTGCAAAGGGACTGGCGATTTCCCCTCCTGAGAAATTGAGATTTTCGACTTGGAGA 1245
Query 1257 TTTGTTTCTGACCTAGCATTAACTATGGCTGCCTCAATTCTCCATTCATTCATTTTATTA 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 TTTGTTTCTGACCTAGCATTAACTATGGCTGCCTCAATTCTCCATTCATTCATTTTATTA 1305
Query 1317 GCTCAGGCAATTACGTTGTCAACTTGTATTGTTGCTCACAACAATGCCTTGTTGGCCCTT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 GCTCAGGCAATTACGTTGTCAACTTGTATTGTTGCTCACAACAATGCCTTGTTGGCCCTT 1365
Query 1377 CTGGTGTCAAATAACTTTGCTGAGATCAAGAGCAGTGTCTTTAAGCGTTTCAGCAAGGAC 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 CTGGTGTCAAATAACTTTGCTGAGATCAAGAGCAGTGTCTTTAAGCGTTTCAGCAAGGAC 1425
Query 1437 AACATTCATGGTCTAGTATATGCGGATTCAATAGAGAGATTCCACATATCGGCCTTCTTG 1496
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1426 AACATTCATGGTCTAGTATATGCGGATTCAATAGAGAGATTTCACATATCGGCCTTCTTG 1485
Query 1497 GTGTCAGTTTTGGCTCAAAATATTCTCGAGTCTGAAGGTGCATGGTTTGGAAA-TTTCAT 1555
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 1486 GTGTCTGTTTTGGCTCAAAATATCCTCGAGTCTGAAGGTGCATGGTTTGGAAACTTT-AT 1544
Query 1556 CTACAATGCTACTACGGTCTTCTTCTGTGAGATGATGATAGACATCATCAAGCATTCATT 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 CTACAATGCTACTACGGTCTTCTTCTGTGAGATGATGATAGACATCATCAAGCATTCATT 1604
Query 1616 TCTTGCCAAGTTCAATGACATCAAACCTATAGCGTACTCTGAGTTTCTTCAAGCCCTCTG 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 TCTTGCCAAGTTCAATGACATCAAACCTATAGCGTACTCTGAGTTTCTTCAAGCCCTCTG 1664
Query 1676 CGAGCAGACTTTGAACATTCGTCCGGAAGATAGAAAGACAAATCTCACCTTTGTTCCCCT 1735
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1665 CGAGCAGACTTTGAACATTCGCCCGGAAGATAGAAAGACAAATCTCACCTTTGTTCCCCT 1724
Query 1736 TGCACCTGCTTGTGTGGTGATCCGAGTACTGACACCAGTATACGCAGCACACTTGCCATA 1795
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1725 TGCACCCGCTTGTGTGGTGATCCGAGTACTGACTCCAGTATACGCAGCACACTTGCCGTA 1784
Query 1796 CAGTCCACTCCCATGGAGAATGTTGTGGATGGTCATCTTATTCGTCATAACATATATAAT 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 CAGTCCACTCCCATGGAGAATGTTGTGGATGGTCATCTTATTCGTCATAACATATATAAT 1844
Query 1856 GCTCACAAGCCTCAAAGTTCTCATCGGCATGGGACTGAGAAAACATGCAACTTGGTATAT 1915
||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||
Sbjct 1845 GCTCACAAGCCTCAAAGTTCTGATCGGCATGGGACTTAGGAAACATGCAACTTGGTACAT 1904
Query 1916 TAATCGATGCCGAAGAAGAAACTCCTCCCATCTCCACAATGATTAGGCT-G-AA-GA--- 1969
|||| |||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 1905 TAATAGATGCCGAAGAAGAAACTCCTCCCATCTCCACAATGATTAGGCTTGGAATGAAGA 1964
Query 1970 TCATCTTTTGTGATCTTATTATACGTGTTTAAATATTCGATGAAGCGATTTTTGTTGTGG 2029
||||||| |||||||||| |||||||||||| ||||||||||||| ||||| |||||||
Sbjct 1965 TCATCTTC-GTGATCTTATAATACGTGTTTAA-TATTCGATGAAGCAATTTT-GTTGTGG 2021
Query 2030 TTAGGCATATATACATATGTACAAAGAAAGAGA--CCTCATGGATCATTTGGCAAAA 2084
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2022 TTAGGCATACATACATATGTACAAAGAAAGAGAGACCTCATGGATCATTTGGCAAAA 2078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79646702295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5