BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67970.1
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908380 jgi|Araly1|908380|Al_scaffold_0002_1461 1611 0.0
> Ahg908380 jgi|Araly1|908380|Al_scaffold_0002_1461
Length=1125
Score = 1611 bits (872), Expect = 0.0
Identities = 1053/1137 (93%), Gaps = 26/1137 (2%)
Strand=Plus/Plus
Query 150 ATGGTGAAATCGACGGACGGTGGTGGTGGGtcttcttcttcttcttcAGTGGCGCCGTTC 209
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1 ATGGTGAAATCGACGGACGGTGGTGGTGGG---TCTTCTTCTTCTTCAGTGGCACCGTTC 57
Query 210 TTGAGAAAATGTTACGATATGGTTGATGATTCTACTACTGACT-CTATAATCTCATGGAG 268
||||||||||||||||| ||||||||||||||| | ||||| | ||||||||||||||||
Sbjct 58 TTGAGAAAATGTTACGAGATGGTTGATGATTCTTCAACTGA-TGCTATAATCTCATGGAG 116
Query 269 TCCAAGTGCAGATAATAGCTTCGTTATCTTGGACACCACCGTCTTCTCTGTTCAACTCTT 328
| ||||||||||||| ||||| |||||||||||||| | ||||||||||||| |||| ||
Sbjct 117 TACAAGTGCAGATAACAGCTTTGTTATCTTGGACACGAACGTCTTCTCTGTTGAACTTTT 176
Query 329 GCCTAAATACTTTAAACACAGCAATTTCTCTAGCTTCATTCGTCAGCTCAATATCTACGG 388
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 177 GCCTAAATACTTTAAACACAGCAATTTCTCTAGCTTTATTCGTCAGCTCAATATCTACGG 236
Query 389 TTTTAGAAAAGTTGATGCAGATCGATGGGAGTTTGCGAATGACGGGTTTGTGAGAGGTCA 448
||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 237 GTTTAGAAAAGTTGATGCAGATCGTTGGGAGTTTGCGAATGACGGGTTTGTTAAAGGTCA 296
Query 449 AAAGGATTTGCTGAAGAATGTTATCAGGAGGAAGAATGTTCAAAGTAGTGAGCAGAGCAA 508
||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 297 AAAGGATTTATTAAAGAATGTTATCCGGAGGAAGAATGTTCAAAGTAGTGAGCAGAGCAA 356
Query 509 ACATGAGAGTACAAGTAC-A--ACATATGCTCA-G----GA---A-AAGAGTGGATTGTG 556
||| |||| || |||||| | ||||||||||| | || | ||||||||||||||
Sbjct 357 ACAGGAGAATAGAAGTACAAGTACATATGCTCAGGAAAAGACTGAGAAGAGTGGATTGTG 416
Query 557 GAAGGAAGTTGATATTTTGAAAGGTGATAAGCAGGTATTGGCGCAGGAGTTGATCAAAGT 616
||| ||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 417 GAAAGAAGTTGATATCTTGAAAGGCGATAAGCAGGTATTGGCTCAAGAGTTGATCAAAGT 476
Query 617 TAGGCAGTATCAGGAGGTGACGGATACTAAGATGTTACATTTAGAAGACAGAGTTCAAGG 676
|||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||
Sbjct 477 TAGGCAGTATCAGGAGACGACGGATACTAAGATGTTACACTTAGAAGATAGAGTTCAAGG 536
Query 677 AATGGAAGAGAGTCAGCAGGAGATGCTTTCGTTTTTGGTTATGGTTATGAAGAATCCAAG 736
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 537 AATGGAAGAGAGTCAGCAGGAGATGCTTTCGTTTTTGGTAATGGTTATGAAGAATCCTAG 596
Query 737 TCTTTTAGTTCAGTTACTTCAGCCAAAGGAGAAAAACACTTGGCGAAAAGCGGGGGAAGG 796
||||||||||||||| ||||| |||||||||||||||| |||||||||||| ||||||
Sbjct 597 TCTTTTAGTTCAGTTGCTTCAACCAAAGGAGAAAAACAGTTGGCGAAAAGC---GGAAGG 653
Query 797 AGCGAAGATTGTGGAAGAAGTGACTGATGAAGGAGAATCAAACTCATATGGTCTTCCTTT 856
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 AGCGACGATTGTTGAAGAAGTGACTGATGAAGGAGAATCAAACTCATATGGTCTTCCTTT 713
Query 857 AGTAACATACCAGCCACCATCGGACAACAATGGAACTGCAAAGTCAAACTCGAACGACGT 916
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 714 AGTAACATACCAGCCACCATCGGACAAC---GGAACAGCAAAGTCAAACTCGAACGACGT 770
Query 917 AAATGATTTCTTGAGAAACGCCGATATGTTGAAGTTCTGCTTAGATGAAAACCATGTGCC 976
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||
Sbjct 771 AAATGATTTCTTGAGAAACGCCGATATGTTGAAGTTCTGCCTAGATGAAAATCATGTACC 830
Query 977 ATTGATCATACCTGATCTATACGATGATGGAGCATGGGAAAAGCTTTTGTTGTTGAGCCC 1036
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 831 ATTAATCATACCTGATCTATACGATGATGGAGCATGGGAAAAGCTTTTGTTATTGAGCCC 890
Query 1037 TTCAAGGAAGAAGACGAAGAAGCAGGAGAACATTGTGAAGAAAGGAAAGGATGATTTGAC 1096
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 891 TTCAAGGAAGAAGACGAAGAAGCAAGAGAACATTGTGAAGAAAGGAAAGGATGATTCGAC 950
Query 1097 ATTggaggaggaggaggaggaTGGAACAATGGAATTAGACAAGAGCTATATGCTTAAGCT 1156
|||||||||||||||||| |||||| ||||||||||| |||||| ||||||| |||||
Sbjct 951 ATTGGAGGAGGAGGAGGA---TGGAACTATGGAATTAGAAAAGAGCCATATGCTCAAGCT 1007
Query 1157 GATATCAGAAGAGATGGAGAAACCAGATGACTTTGAATTTGGACAGCTTACTCCTGAGAG 1216
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1008 GATATCAGAAGAGATGGAGAAACCAGATGACTTTGAATTTGGACAGCTCACTCCAGAGAG 1067
Query 1217 GTCTAGGAACCTTGAGATTTTGACAGAGCAGATGGAATTGCTGGCTTCAAATGAATA 1273
||||||||| ||||||||| |||| ||||| |||||||| |||||||||||||||||
Sbjct 1068 GTCTAGGAATCTTGAGATTCTGACTGAGCAAATGGAATTACTGGCTTCAAATGAATA 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53059711285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5