BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67980.1
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475925 jgi|Araly1|475925|fgenesh2_kg.2__1055__AT1G67980.1 1181 0.0
Ahg475924 jgi|Araly1|475924|fgenesh2_kg.2__1054__AT1G67990.1 616 1e-175
> Ahg475925 jgi|Araly1|475925|fgenesh2_kg.2__1055__AT1G67980.1
Length=878
Score = 1181 bits (639), Expect = 0.0
Identities = 828/912 (91%), Gaps = 41/912 (4%)
Strand=Plus/Plus
Query 10 CATGGCCAATGAAATTCCTACCAAAGGGATTCTCAAGAGCGAAGCTCTAAAACAGTACAT 69
||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 4 CATGGCCAATGAAATACCTTCCAAAGGGATCCTCAAGAGCGAAGCTCTAAAACAGTACAT 63
Query 70 CATGGAAACGTCAGCGTATCCAAGAGAGCATGAATTGCTCAAGGAACTTCGAAAAGCTAC 129
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 64 CATGGAAACGTCAGCGTATCCAAGAGAGCATGGATTGCTCAAGGAACTTCGACAAGCTAC 123
Query 130 TGTCCAAAAATACGGAAATTTAAGCGAGATGGAGGTTCCGGTTGATGAGGGTCATTTCCT 189
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 124 TGTCCAAAAATACGGAAATTTAAGTGAGATGGAGGTTCCGGTTGATGAGGGTCATTTTCT 183
Query 190 ATCGATGCTTGTAAAGATCATGAATGCGAAAAACACTATCGAGA-TCGGTGTTTTCACCG 248
|||||||||||||||||| |||||||||||||||||| |||| | |||||||||||||||
Sbjct 184 ATCGATGCTTGTAAAGATAATGAATGCGAAAAACACTCTCGA-ACTCGGTGTTTTCACCG 242
Query 249 GTTACTCGCTTCTCACTACAGCTCTTGCTTTACCTGAAGATGGCCGTATTACCGCGATAG 308
| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 243 GCTACTCACTACTCACTACAGCTCTTGCTTTGCCTGAAGATGGCCGTATTACCGCGATAG 302
Query 309 ACATTGATAAAGAAGCTTACGAAGTTGGACTAGAGTTTATTAAGAAGGCTGGTGTTGATC 368
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 303 ACATTGATAAAGAAGCTTACGAAGTTGGACTAGAGTTTATCAAGAAGGCTGGTGTTGATC 362
Query 369 ACAAGATTAATTTTATCCATTCCGATGGTCTTAAGGCCTTAGACCAATTGGTGAACGACA 428
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 363 ACAAGATTAATTTTATCCATTCCGATGGTCTTAAAGCCTTAGACCAATTGGTGAACGACA 422
Query 429 AATGTGAGTTTGATTTTGCATTTGCGGATGCTGACAAATCAAGCTACGTCAACTTCCATG 488
||| ||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||
Sbjct 423 AATCTGAGTTTGATTTTGCATTTGCGGATGCTGACAAGTCAAACTATGTCAACTTCCATG 482
Query 489 AGAGGCTTCTAAAATTGGTGAAGGTTGGGGGAATCATTGCGTTCGACAACACCTTGTGGT 548
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 483 AGAGGCTTCTAAAACTGGTGAAGGTTGGAGGAATCATTGCGTTCGACAACACCTTGTGGT 542
Query 549 TTGGTTTTGTGGCGGAGGATGAAGATGGAGTTCCGGAGCATATGAGAGAATATAGAGCAG 608
||||||||||||| ||||||||||| |||||||| || |||||||| |||||||||||||
Sbjct 543 TTGGTTTTGTGGCTGAGGATGAAGAGGGAGTTCCAGATCATATGAGGGAATATAGAGCAG 602
Query 609 CTCTTATAGAATTCAATAAGAAATTGGCTTTGGATCCCCGAGTCGAGGTCTCTCAGATTT 668
|||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 603 CTCTTATAGAGTTCAATAAGAAATTGGCTTTGGATCCTCGCGTCGAGGTCTCTCAGATTT 662
Query 669 CCATTGGAGATGGTATCACGCTCTGTAGACGTCTTGTTTGATCAAAAGACTACTTGAAGA 728
|||||||||||||| |||||||||| ||||||||||| ||||||||| | ||| |
Sbjct 663 CCATTGGAGATGGTGTCACGCTCTGCAGACGTCTTGTATGATCAAAA--C-ACT--A--- 714
Query 729 GTACGTAGCAGAACCAAAGTCGGAGAGTTTGGAATAAAAGTGTTAGATGGT-TCAATAAC 787
| | || || || |||||||||||||||||||| ||||||| | | |||||
Sbjct 715 ---C-T--CA-AA-----GTTGGAGAGTTTGGAATAAAAGTATTAGATGCTAT-AATAAT 761
Query 788 GACTTCGTCTTTTGTCACAACTTTGCTTGTAATGGTGTGTTTGATTGATGCTCACTCTTT 847
||||||||||||||| | | | | || | ||| || |||||||| ||||||||
Sbjct 762 GACTTCGTCTTTTGT-A-A--T--G---GT---G-TGT-TT-GATTGATGATCACTCTTC 806
Query 848 ATCTTCTTTCTATGTTGTGGTTTCGTCGATGTTGTTCTGTCTG--GCAACAAAACTATTA 905
||||||||||||||| ||||||| |||||||||| ||||||| |||||||||||||||
Sbjct 807 ATCTTCTTTCTATGTCGTGGTTTTGTCGATGTTGCTCTGTCTCACGCAACAAAACTATTA 866
Query 906 GTACACTAAATT 917
|| |||||||||
Sbjct 867 GTTCACTAAATT 878
> Ahg475924 jgi|Araly1|475924|fgenesh2_kg.2__1054__AT1G67990.1
Length=849
Score = 616 bits (333), Expect = 1e-175
Identities = 573/689 (83%), Gaps = 15/689 (2%)
Strand=Plus/Plus
Query 31 CAAAGGGATTCTCAAGAGCGAAGCTCTAAAACAGTACATCATGGAAACGTCAGCGTATCC 90
||||||||||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||
Sbjct 56 CAAAGGGATTCTCAAGAGCGAGGCTCTTAAACAGTACATTATGGAAACGACAGCGTATCC 115
Query 91 AAGAGAGCATGAATTGCTCAAGGAACTTCGAAAAGCTACTGTCCAAAAATACGGAAATTT 150
||||||||| | |||||| || ||||||||| ||||||| |||||| ||| || |||||
Sbjct 116 AAGAGAGCACGCATTGCTTAAAGAACTTCGAGAAGCTACAATCCAAAGATATGGCAATTT 175
Query 151 AAGCGAGATGGAGGTTCCGGTTGATGAGGGTC-ATTTCCTATCGATGCTTGTAAAGATCA 209
||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| |
Sbjct 176 AAGCGAGATGGAGGTTCCGGTTGATGAAAGTCTATTTC-TATCGATGCTTGTAAAGATAA 234
Query 210 TGAATGCGAAAAACACTATCGAGATCGGTGTTTTCACCGGTTACTCGCTTCTCACTACAG 269
||||||||||||||||||||||||||||||| ||||| |||||||| ||| |||| ||
Sbjct 235 TGAATGCGAAAAACACTATCGAGATCGGTGTGTTCACGGGTTACTCACTTTTCACCGTAG 294
Query 270 CTCTTGCTTTACCTGAAGATGGCCGTATTACCGCGATAGACATTGATAAAGAAGCTTACG 329
|||||||||| |||||||||||||||||||| |||||||||||||| ||| || ||||
Sbjct 295 CTCTTGCTTTGCCTGAAGATGGCCGTATTACTGCGATAGACATTGACCAAGCAGGTTAC- 353
Query 330 AAGTTGG-ACTAGAGTTTATTAAGAAGGCTGGTGTTGATCACAAGATTAATTTTATCCAT 388
|| |||| |||||||||||| ||||| || ||||||||||||||||| ||||| || ||
Sbjct 354 AATTTGGGACTAGAGTTTATGAAGAAAGCAGGTGTTGATCACAAGATCAATTTCATTCAA 413
Query 389 TCCGATGGTCTTA-AGGCCTTAGACCAATTGGTGAACG---ACAAATGTGAGTTTGATTT 444
|| |||| | ||| |||| ||||||||||| |||||| | ||| |||| ||||||
Sbjct 414 TCTGATGCTGTTAGAGGC-TTAGACCAATTATTGAACGGGGAGAAACAAGAGTATGATTT 472
Query 445 TGCATTTGCGGATGCTGACAA-ATC-AAGCTACGTCAACTTCCATGAGAGGCTTCTAAAA 502
|||||||| |||||||||||| | | || ||| || |||||| ||||| ||| || ||
Sbjct 473 TGCATTTGTGGATGCTGACAAGA-CGAA-CTATGTTTACTTCCTTGAGAAGCTGCTTAAG 530
Query 503 TTGGTGAAGGTTGGGGGAATCATTGCGTTCGACAACACCTTGTGGTTTGGTTTTGTGGCG 562
|| ||||||||||| ||||||||||||||||| |||||||| ||||||||| | |
Sbjct 531 TTAGTGAAGGTTGGAGGAATCATTGCGTTCGATAACACCTTATGGTTTGGTACTCTAATT 590
Query 563 GAGGATGAAGATGGAGTTCCGGAGC-ATATGAGAGAATATAGAGCAGCTCTTATAGAATT 621
|| | ||| | | |||||| ||| ||||||||| ||||||| ||| ||| |||| ||
Sbjct 591 CAGAAGGAAAACGAAGTTCCA-AGCCATATGAGAGCTTATAGAGAAGCACTTTTAGAGTT 649
Query 622 CAATAAGAAATTGGCTTTGGATCCCCGAGTCGAGGTCTCTCAGATTTCCATTGGAGATGG 681
||| |||| ||||| |||||| |||||||| || ||||||| ||||| ||||||||
Sbjct 650 CAACAAGATTTTGGCACGGGATCCTCGAGTCGAAATCGCTCAGATATCCATCGGAGATGG 709
Query 682 TATCACGCTCTGTAGACGTCTTGTTTGAT 710
| |||| | || ||||| ||| | ||||
Sbjct 710 TCTCACATTATGCAGACGCCTTATATGAT 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37398581577
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5