BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67990.1 Length=859 Score E Sequences producing significant alignments: (Bits) Value Ahg475924 jgi|Araly1|475924|fgenesh2_kg.2__1054__AT1G67990.1 1286 0.0 Ahg475925 jgi|Araly1|475925|fgenesh2_kg.2__1055__AT1G67980.1 619 9e-177 > Ahg475924 jgi|Araly1|475924|fgenesh2_kg.2__1054__AT1G67990.1 Length=849 Score = 1286 bits (696), Expect = 0.0 Identities = 804/855 (94%), Gaps = 12/855 (1%) Strand=Plus/Plus Query 1 AACACTCAAAAGAGATTCTCACGATCGAGCAAGAGAGAGATGGATGGTCGATTACCTGAC 60 ||||||||||||||| || | | | ||||||||||||||||||||||||||||||||||| Sbjct 1 AACACTCAAAAGAGA-TC-CTC-A-CGAGCAAGAGAGAGATGGATGGTCGATTACCTGAC 56 Query 61 AAAGGCATTCTCAAGAGCGAGGCTCTAAAACAGTACATCATGGAAACAACAGCGTATCCA 120 ||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||| Sbjct 57 AAAGGGATTCTCAAGAGCGAGGCTCTTAAACAGTACATTATGGAAACGACAGCGTATCCA 116 Query 121 AGAGAACACGAATTGCTTAAAGAACTTCGAGAAGCTACAATCCAGAGATATGGAAATTTA 180 ||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 117 AGAGAGCACGCATTGCTTAAAGAACTTCGAGAAGCTACAATCCAAAGATATGGCAATTTA 176 Query 181 AGCGAGATGGGA-GTTCCGGTTGATGAAAGTCTATTTTTATCGATGCTTGTAAAGATCAT 239 |||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 177 AGCGAGAT-GGAGGTTCCGGTTGATGAAAGTCTATTTCTATCGATGCTTGTAAAGATAAT 235 Query 240 CAACGCGAAAAACACTATCGAGATCGGTGTGTTCACCGGTTACTCACTTTTCACCGTAGC 299 || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 236 GAATGCGAAAAACACTATCGAGATCGGTGTGTTCACGGGTTACTCACTTTTCACCGTAGC 295 Query 300 TCTTGCTTTGCCTGAAGATGGCCGTATTACTGCGATAGACATTGATCAAGCAGGTTACAA 359 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 296 TCTTGCTTTGCCTGAAGATGGCCGTATTACTGCGATAGACATTGACCAAGCAGGTTACAA 355 Query 360 TTTGGGACTAGAGTTTATGAAGAAAGCAGGTGTTGATCACAAGATCAATTTCATTCAATC 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 TTTGGGACTAGAGTTTATGAAGAAAGCAGGTGTTGATCACAAGATCAATTTCATTCAATC 415 Query 420 TGATGCTGTTAGAGGCTTAGACCAATTATTGAACGGGGAGAAACAAGAGTATGATTTTGC 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 TGATGCTGTTAGAGGCTTAGACCAATTATTGAACGGGGAGAAACAAGAGTATGATTTTGC 475 Query 480 ATTTGTGGATGCTGACAAGACGAACTACGTTTACTTCCTTGAGAAGCTCCTTAAGTTAGT 539 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 476 ATTTGTGGATGCTGACAAGACGAACTATGTTTACTTCCTTGAGAAGCTGCTTAAGTTAGT 535 Query 540 GAAGGTTGGAGGAATCATTGCCTTCGACAACACTTTATGGTTTGGTACTCTAATTCAGAA 599 ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 536 GAAGGTTGGAGGAATCATTGCGTTCGATAACACCTTATGGTTTGGTACTCTAATTCAGAA 595 Query 600 GGAAAACGAAGTTCCAGGCCATATGAGAGCTTATAGAGAGGCACTTTTAGAGTTCAATAA 659 |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| || Sbjct 596 GGAAAACGAAGTTCCAAGCCATATGAGAGCTTATAGAGAAGCACTTTTAGAGTTCAACAA 655 Query 660 GATATTGGCTCGGGATCCTCGAGTCGAAATCGCTCAAATATCCATCGGAGATGGTCTCAC 719 ||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 656 GATTTTGGCACGGGATCCTCGAGTCGAAATCGCTCAGATATCCATCGGAGATGGTCTCAC 715 Query 720 GCTATGTAGACGTCTTATATGAT--AAACCTATAGTAAATAATGTTATATGCTTCAATAA 777 |||| ||||| |||||||||| ||| | |||||||||||||||| |||| |||||| Sbjct 716 ATTATGCAGACGCCTTATATGATTGAAAT-TGTAGTAAATAATGTTATGTGCTACAATAA 774 Query 778 T-AACTTTGGCCTTTGTTTGTAATGTTATA-TGCTACTATAATGACTCTTCATCTTCCTA 835 | || |||| ||||| |||||||||||||| |||||| |||||||| ||||||||||||| Sbjct 775 TGAA-TTTGTCCTTTATTTGTAATGTTATAATGCTACAATAATGACCCTTCATCTTCCTA 833 Query 836 ATAAAACTCCTCTTT 850 |||||||| |||||| Sbjct 834 ATAAAACTTCTCTTT 848 > Ahg475925 jgi|Araly1|475925|fgenesh2_kg.2__1055__AT1G67980.1 Length=878 Score = 619 bits (335), Expect = 9e-177 Identities = 581/700 (83%), Gaps = 16/700 (2%) Strand=Plus/Plus Query 53 TACCTGACAAAGGCATTCTCAAGAGCGAGGCTCTAAAACAGTACATCATGGAAACAACAG 112 ||||| |||||| || ||||||||||| |||||||||||||||||||||||||| ||| Sbjct 18 TACCTTCCAAAGGGATCCTCAAGAGCGAAGCTCTAAAACAGTACATCATGGAAACGTCAG 77 Query 113 CGTATCCAAGAGAACACGAATTGCTTAAAGAACTTCGAGAAGCTACAATCCAGAGATATG 172 ||||||||||||| || | |||||| || ||||||||| ||||||| |||| | ||| | Sbjct 78 CGTATCCAAGAGAGCATGGATTGCTCAAGGAACTTCGACAAGCTACTGTCCAAAAATACG 137 Query 173 GAAATTTAAGCGAGATGGGA-GTTCCGGTTGATGAAAGTCTATTTT-TATCGATGCTTGT 230 |||||||||| ||||| ||| |||||||||||||| ||| ||||| ||||||||||||| Sbjct 138 GAAATTTAAGTGAGAT-GGAGGTTCCGGTTGATGAGGGTC-ATTTTCTATCGATGCTTGT 195 Query 231 AAAGATCATCAACGCGAAAAACACTATCGAGA-TCGGTGTGTTCACCGGTTACTCACTTT 289 |||||| || || |||||||||||| |||| | ||||||| |||||||| |||||||| Sbjct 196 AAAGATAATGAATGCGAAAAACACTCTCGA-ACTCGGTGTTTTCACCGGCTACTCACTAC 254 Query 290 TCACCGTAGCTCTTGCTTTGCCTGAAGATGGCCGTATTACTGCGATAGACATTGATCAAG 349 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 255 TCACTACAGCTCTTGCTTTGCCTGAAGATGGCCGTATTACCGCGATAGACATTGATAAAG 314 Query 350 CAGGTTAC-AATTTGGGACTAGAGTTTATGAAGAAAGCAGGTGTTGATCACAAGATCAAT 408 || |||| || |||| |||||||||||| ||||| || ||||||||||||||||| ||| Sbjct 315 AAGCTTACGAAGTTGG-ACTAGAGTTTATCAAGAAGGCTGGTGTTGATCACAAGATTAAT 373 Query 409 TTCATTCAATCTGATGCTGTTAGAGGCTTAGACCAATTATTGAACGGGGAGAAA-CAAGA 467 || || || || |||| | ||| || |||||||||||| |||||| | ||| | || Sbjct 374 TTTATCCATTCCGATGGTCTTAAAGCCTTAGACCAATTGGTGAACG---ACAAATCT-GA 429 Query 468 GTATGATTTTGCATTTGTGGATGCTGACAAGACGAACTACGTTTACTTCCTTGAGAAGCT 527 || |||||||||||||| ||||||||||||| | ||||| || |||||| ||||| ||| Sbjct 430 GTTTGATTTTGCATTTGCGGATGCTGACAAGTCAAACTATGTCAACTTCCATGAGAGGCT 489 Query 528 CCTTAAGTTAGTGAAGGTTGGAGGAATCATTGCCTTCGACAACACTTTATGGTTTGGTAC 587 || || | ||||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct 490 TCTAAAACTGGTGAAGGTTGGAGGAATCATTGCGTTCGACAACACCTTGTGGTTTGGTTT 549 Query 588 TCTAATTCAGAAGGAAAACGAAGTTCCAGGCCATATGAGAGCTTATAGAG-AGGCACTTT 646 | | | || | ||| | | |||||||| |||||||| | ||||||| || | ||| Sbjct 550 TGTGGCTGAGGATGAAGAGGGAGTTCCAGATCATATGAGGGAATATAGAGCAG-CTCTTA 608 Query 647 TAGAGTTCAATAAGATATTGGCTCGGGATCCTCGAGTCGAAATCGCTCAAATATCCATCG 706 ||||||||||||||| ||||||| ||||||||| ||||| || |||| || ||||| | Sbjct 609 TAGAGTTCAATAAGAAATTGGCTTTGGATCCTCGCGTCGAGGTCTCTCAGATTTCCATTG 668 Query 707 GAGATGGTCTCACGCTATGTAGACGTCTTATATGAT-AAA 745 |||||||| ||||||| || ||||||||| |||||| ||| Sbjct 669 GAGATGGTGTCACGCTCTGCAGACGTCTTGTATGATCAAA 708 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31794512778 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5