BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67990.1
Length=859
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475924 jgi|Araly1|475924|fgenesh2_kg.2__1054__AT1G67990.1 1286 0.0
Ahg475925 jgi|Araly1|475925|fgenesh2_kg.2__1055__AT1G67980.1 619 9e-177
> Ahg475924 jgi|Araly1|475924|fgenesh2_kg.2__1054__AT1G67990.1
Length=849
Score = 1286 bits (696), Expect = 0.0
Identities = 804/855 (94%), Gaps = 12/855 (1%)
Strand=Plus/Plus
Query 1 AACACTCAAAAGAGATTCTCACGATCGAGCAAGAGAGAGATGGATGGTCGATTACCTGAC 60
||||||||||||||| || | | | |||||||||||||||||||||||||||||||||||
Sbjct 1 AACACTCAAAAGAGA-TC-CTC-A-CGAGCAAGAGAGAGATGGATGGTCGATTACCTGAC 56
Query 61 AAAGGCATTCTCAAGAGCGAGGCTCTAAAACAGTACATCATGGAAACAACAGCGTATCCA 120
||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 57 AAAGGGATTCTCAAGAGCGAGGCTCTTAAACAGTACATTATGGAAACGACAGCGTATCCA 116
Query 121 AGAGAACACGAATTGCTTAAAGAACTTCGAGAAGCTACAATCCAGAGATATGGAAATTTA 180
||||| |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 117 AGAGAGCACGCATTGCTTAAAGAACTTCGAGAAGCTACAATCCAAAGATATGGCAATTTA 176
Query 181 AGCGAGATGGGA-GTTCCGGTTGATGAAAGTCTATTTTTATCGATGCTTGTAAAGATCAT 239
|||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 177 AGCGAGAT-GGAGGTTCCGGTTGATGAAAGTCTATTTCTATCGATGCTTGTAAAGATAAT 235
Query 240 CAACGCGAAAAACACTATCGAGATCGGTGTGTTCACCGGTTACTCACTTTTCACCGTAGC 299
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 236 GAATGCGAAAAACACTATCGAGATCGGTGTGTTCACGGGTTACTCACTTTTCACCGTAGC 295
Query 300 TCTTGCTTTGCCTGAAGATGGCCGTATTACTGCGATAGACATTGATCAAGCAGGTTACAA 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 296 TCTTGCTTTGCCTGAAGATGGCCGTATTACTGCGATAGACATTGACCAAGCAGGTTACAA 355
Query 360 TTTGGGACTAGAGTTTATGAAGAAAGCAGGTGTTGATCACAAGATCAATTTCATTCAATC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TTTGGGACTAGAGTTTATGAAGAAAGCAGGTGTTGATCACAAGATCAATTTCATTCAATC 415
Query 420 TGATGCTGTTAGAGGCTTAGACCAATTATTGAACGGGGAGAAACAAGAGTATGATTTTGC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TGATGCTGTTAGAGGCTTAGACCAATTATTGAACGGGGAGAAACAAGAGTATGATTTTGC 475
Query 480 ATTTGTGGATGCTGACAAGACGAACTACGTTTACTTCCTTGAGAAGCTCCTTAAGTTAGT 539
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 476 ATTTGTGGATGCTGACAAGACGAACTATGTTTACTTCCTTGAGAAGCTGCTTAAGTTAGT 535
Query 540 GAAGGTTGGAGGAATCATTGCCTTCGACAACACTTTATGGTTTGGTACTCTAATTCAGAA 599
||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 536 GAAGGTTGGAGGAATCATTGCGTTCGATAACACCTTATGGTTTGGTACTCTAATTCAGAA 595
Query 600 GGAAAACGAAGTTCCAGGCCATATGAGAGCTTATAGAGAGGCACTTTTAGAGTTCAATAA 659
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 596 GGAAAACGAAGTTCCAAGCCATATGAGAGCTTATAGAGAAGCACTTTTAGAGTTCAACAA 655
Query 660 GATATTGGCTCGGGATCCTCGAGTCGAAATCGCTCAAATATCCATCGGAGATGGTCTCAC 719
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 656 GATTTTGGCACGGGATCCTCGAGTCGAAATCGCTCAGATATCCATCGGAGATGGTCTCAC 715
Query 720 GCTATGTAGACGTCTTATATGAT--AAACCTATAGTAAATAATGTTATATGCTTCAATAA 777
|||| ||||| |||||||||| ||| | |||||||||||||||| |||| ||||||
Sbjct 716 ATTATGCAGACGCCTTATATGATTGAAAT-TGTAGTAAATAATGTTATGTGCTACAATAA 774
Query 778 T-AACTTTGGCCTTTGTTTGTAATGTTATA-TGCTACTATAATGACTCTTCATCTTCCTA 835
| || |||| ||||| |||||||||||||| |||||| |||||||| |||||||||||||
Sbjct 775 TGAA-TTTGTCCTTTATTTGTAATGTTATAATGCTACAATAATGACCCTTCATCTTCCTA 833
Query 836 ATAAAACTCCTCTTT 850
|||||||| ||||||
Sbjct 834 ATAAAACTTCTCTTT 848
> Ahg475925 jgi|Araly1|475925|fgenesh2_kg.2__1055__AT1G67980.1
Length=878
Score = 619 bits (335), Expect = 9e-177
Identities = 581/700 (83%), Gaps = 16/700 (2%)
Strand=Plus/Plus
Query 53 TACCTGACAAAGGCATTCTCAAGAGCGAGGCTCTAAAACAGTACATCATGGAAACAACAG 112
||||| |||||| || ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 18 TACCTTCCAAAGGGATCCTCAAGAGCGAAGCTCTAAAACAGTACATCATGGAAACGTCAG 77
Query 113 CGTATCCAAGAGAACACGAATTGCTTAAAGAACTTCGAGAAGCTACAATCCAGAGATATG 172
||||||||||||| || | |||||| || ||||||||| ||||||| |||| | ||| |
Sbjct 78 CGTATCCAAGAGAGCATGGATTGCTCAAGGAACTTCGACAAGCTACTGTCCAAAAATACG 137
Query 173 GAAATTTAAGCGAGATGGGA-GTTCCGGTTGATGAAAGTCTATTTT-TATCGATGCTTGT 230
|||||||||| ||||| ||| |||||||||||||| ||| ||||| |||||||||||||
Sbjct 138 GAAATTTAAGTGAGAT-GGAGGTTCCGGTTGATGAGGGTC-ATTTTCTATCGATGCTTGT 195
Query 231 AAAGATCATCAACGCGAAAAACACTATCGAGA-TCGGTGTGTTCACCGGTTACTCACTTT 289
|||||| || || |||||||||||| |||| | ||||||| |||||||| ||||||||
Sbjct 196 AAAGATAATGAATGCGAAAAACACTCTCGA-ACTCGGTGTTTTCACCGGCTACTCACTAC 254
Query 290 TCACCGTAGCTCTTGCTTTGCCTGAAGATGGCCGTATTACTGCGATAGACATTGATCAAG 349
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 255 TCACTACAGCTCTTGCTTTGCCTGAAGATGGCCGTATTACCGCGATAGACATTGATAAAG 314
Query 350 CAGGTTAC-AATTTGGGACTAGAGTTTATGAAGAAAGCAGGTGTTGATCACAAGATCAAT 408
|| |||| || |||| |||||||||||| ||||| || ||||||||||||||||| |||
Sbjct 315 AAGCTTACGAAGTTGG-ACTAGAGTTTATCAAGAAGGCTGGTGTTGATCACAAGATTAAT 373
Query 409 TTCATTCAATCTGATGCTGTTAGAGGCTTAGACCAATTATTGAACGGGGAGAAA-CAAGA 467
|| || || || |||| | ||| || |||||||||||| |||||| | ||| | ||
Sbjct 374 TTTATCCATTCCGATGGTCTTAAAGCCTTAGACCAATTGGTGAACG---ACAAATCT-GA 429
Query 468 GTATGATTTTGCATTTGTGGATGCTGACAAGACGAACTACGTTTACTTCCTTGAGAAGCT 527
|| |||||||||||||| ||||||||||||| | ||||| || |||||| ||||| |||
Sbjct 430 GTTTGATTTTGCATTTGCGGATGCTGACAAGTCAAACTATGTCAACTTCCATGAGAGGCT 489
Query 528 CCTTAAGTTAGTGAAGGTTGGAGGAATCATTGCCTTCGACAACACTTTATGGTTTGGTAC 587
|| || | ||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 490 TCTAAAACTGGTGAAGGTTGGAGGAATCATTGCGTTCGACAACACCTTGTGGTTTGGTTT 549
Query 588 TCTAATTCAGAAGGAAAACGAAGTTCCAGGCCATATGAGAGCTTATAGAG-AGGCACTTT 646
| | | || | ||| | | |||||||| |||||||| | ||||||| || | |||
Sbjct 550 TGTGGCTGAGGATGAAGAGGGAGTTCCAGATCATATGAGGGAATATAGAGCAG-CTCTTA 608
Query 647 TAGAGTTCAATAAGATATTGGCTCGGGATCCTCGAGTCGAAATCGCTCAAATATCCATCG 706
||||||||||||||| ||||||| ||||||||| ||||| || |||| || ||||| |
Sbjct 609 TAGAGTTCAATAAGAAATTGGCTTTGGATCCTCGCGTCGAGGTCTCTCAGATTTCCATTG 668
Query 707 GAGATGGTCTCACGCTATGTAGACGTCTTATATGAT-AAA 745
|||||||| ||||||| || ||||||||| |||||| |||
Sbjct 669 GAGATGGTGTCACGCTCTGCAGACGTCTTGTATGATCAAA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31794512778
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5