BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G68000.1 Length=1005 Score E Sequences producing significant alignments: (Bits) Value Ahg475923 jgi|Araly1|475923|fgenesh2_kg.2__1053__AT1G68000.1 1620 0.0 > Ahg475923 jgi|Araly1|475923|fgenesh2_kg.2__1053__AT1G68000.1 Length=1009 Score = 1620 bits (877), Expect = 0.0 Identities = 971/1014 (96%), Gaps = 16/1014 (2%) Strand=Plus/Plus Query 1 GAATGTTCAAAAGCTGCCAGATTGAGAATATTTCGTCCGTCGTT-GAAACTTGAGAATAG 59 |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 GAATGTTCAAGAGCTGCCAGATTGAGAATATTTCGTCCGTCGTTGGAAACTTGAGAATAG 60 Query 60 AGGCGAATCTGGTTCGAGTTAGGGTTCCAATTGAAAAGTT-TGAAGCTCCTTTTGA---- 114 |||||||||||||||| || |||| ||||||||| | || ||||||||||||||| Sbjct 61 CGGCGAATCTGGTTCGA-TTTGGGTCCCAATTGAAGA-TTCTGAAGCTCCTTTTGACTCC 118 Query 115 --ct-c-tctctctctTCTAGATCTCGACAACTCTAACCTCTTCGATTTGGTGGATCTTG 170 || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 TTCTACATCTCTCTCTTCTAGATCTCGACAACTCTAACCTCTTCGATTTGGTGGATCTTG 178 Query 171 AGAAATTGATTTTAGTTCAAAGCTTCTGATGGCTAAAAAGGAGAGACCTAGACCTGAGAA 230 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 179 AGAAATTGA-TTTAGTTCAAAGC-TCTGATGGCTAAAAAGGAGAGACCTAGACCCGAGAA 236 Query 231 GTTGTCTGTGTATCTTTATATACCTAATATTGTTGGGTATATGAGAGTTCTCTTGAACTG 290 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 237 GTTGTCTGTGTATCTTTATATACCTAATATTGTTGGGTACATGAGAGTTCTCTTGAACTG 296 Query 291 TGTTGCTTTTGCTGTGTGTTTCTCCAACAAGCCACTTTTCTCTGTCCTTTATTTCTTCAG 350 ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 297 TGTTGCTTTTGCTGTGTGTTTCTCCAACAAGACACTTTTCTCGGTCCTTTATTTCTTCAG 356 Query 351 CTTTTGTTGTGATGCTGTGGATGGCTGGGTGGCTCGTAGATTCAACCAAGTTTCAACATT 410 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 357 CTTTTGTTGTGATGCTGTGGATGGCTGGGTCGCTCGTAGATTCAACCAAGTTTCAACATT 416 Query 411 TGGAGCTGTTCTTGACATGGTCACAGATAGAGTTAGCACGGCTTGTCTTCTCGTGATTCT 470 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 417 TGGAGCTGTTCTTGACATGGTCACAGATAGAGTTAGCACGGCTTGTCTACTCGTGATTCT 476 Query 471 CTCTCAAATCTACAGGCCTAGTTTGGTCTTCCTCTCATTGCTGGCTTTAGATATTGCTAG 530 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 477 CTCTCAGATCTACAGGCCTAGCTTGGTCTTCCTCTCATTGCTGGCTTTAGATATTGCTAG 536 Query 531 TCATTGGCTGCAGATGTACAGTACGTTTCTAGCAGGGAAGAGCAGCCATAAGGATGTGAA 590 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 TCACTGGCTGCAGATGTACAGTACGTTTCTAGCAGGGAAGAGCAGCCATAAGGATGTGAA 596 Query 591 AGACAGCACAAGCTGGCTTTTTAGACTCTACTATGGAAACCGGATATTTATGTGTTACTG 650 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 597 AGACAGCACAAGCTGGCTTTTTAGACTCTACTATGGAAACCGGATATTTATGTGTTATTG 656 Query 651 CTGTGTTTCTTGCGAGGTTCTGTATATCATCCTTCTTCTCATTGCAAAGAACCAATCTGA 710 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 657 CTGTGTTTCTTGCGAGGTTCTGTATATCATCCTTCTTCTCATTGCAAAGAACCAATCCGA 716 Query 711 AAATCTCCTGAATGTCGTAGTTGCTACATTAACACAGATTTCACCACTCTCTTTTCTCCT 770 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 717 AAATCTCCTGAATGTCGTAGTTACCACATTAACACAGATTTCACCACTCTCTTTTCTCCT 776 Query 771 GGCTTTGACATTGTTCGGTTGGTCGATGAAGCAGACCATTAATGTCATTCAGATGAAAAC 830 ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 777 GGCGTTGACATTGTTCGGTTGGTCGATGAAGCAGACCGTTAATGTCATTCAGATGAAAAC 836 Query 831 TGCTGCAGACGTTTGTGTACTGTATGATATAGAGAAGCAGCAGAAGCCTTGATCATCTTC 890 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 TGCTGCAGACGTTTGTGTACTGTATGATATAGAGAAGCAGCAGAAGCCTTGATCATCTTC 896 Query 891 CTTTGTCTCAACCTGAAACTCttttt-tttCTTTCATTGTTTGTTCTCTTTTCACTGTGG 949 |||| |||||||||||||||||| || ||| ||| | ||||||| ||||||||||||||| Sbjct 897 CTTTTTCTCAACCTGAAACTCTTCTTCTTT-TTTAACTGTTTGTGCTCTTTTCACTGTGG 955 Query 950 ATGTAGATAATTGTTTTTAATGAAATGAAGAAATATTGATTTGCCTTTTGACAT 1003 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 956 ATGTAGATAATTGTTTTTAATGAGATGAAGAAATATTGTTTTGCCTTTTGACAT 1009 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37360458660 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5