BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68000.1
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475923 jgi|Araly1|475923|fgenesh2_kg.2__1053__AT1G68000.1 1620 0.0
> Ahg475923 jgi|Araly1|475923|fgenesh2_kg.2__1053__AT1G68000.1
Length=1009
Score = 1620 bits (877), Expect = 0.0
Identities = 971/1014 (96%), Gaps = 16/1014 (2%)
Strand=Plus/Plus
Query 1 GAATGTTCAAAAGCTGCCAGATTGAGAATATTTCGTCCGTCGTT-GAAACTTGAGAATAG 59
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 GAATGTTCAAGAGCTGCCAGATTGAGAATATTTCGTCCGTCGTTGGAAACTTGAGAATAG 60
Query 60 AGGCGAATCTGGTTCGAGTTAGGGTTCCAATTGAAAAGTT-TGAAGCTCCTTTTGA---- 114
|||||||||||||||| || |||| ||||||||| | || |||||||||||||||
Sbjct 61 CGGCGAATCTGGTTCGA-TTTGGGTCCCAATTGAAGA-TTCTGAAGCTCCTTTTGACTCC 118
Query 115 --ct-c-tctctctctTCTAGATCTCGACAACTCTAACCTCTTCGATTTGGTGGATCTTG 170
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTCTACATCTCTCTCTTCTAGATCTCGACAACTCTAACCTCTTCGATTTGGTGGATCTTG 178
Query 171 AGAAATTGATTTTAGTTCAAAGCTTCTGATGGCTAAAAAGGAGAGACCTAGACCTGAGAA 230
||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 179 AGAAATTGA-TTTAGTTCAAAGC-TCTGATGGCTAAAAAGGAGAGACCTAGACCCGAGAA 236
Query 231 GTTGTCTGTGTATCTTTATATACCTAATATTGTTGGGTATATGAGAGTTCTCTTGAACTG 290
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 237 GTTGTCTGTGTATCTTTATATACCTAATATTGTTGGGTACATGAGAGTTCTCTTGAACTG 296
Query 291 TGTTGCTTTTGCTGTGTGTTTCTCCAACAAGCCACTTTTCTCTGTCCTTTATTTCTTCAG 350
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 297 TGTTGCTTTTGCTGTGTGTTTCTCCAACAAGACACTTTTCTCGGTCCTTTATTTCTTCAG 356
Query 351 CTTTTGTTGTGATGCTGTGGATGGCTGGGTGGCTCGTAGATTCAACCAAGTTTCAACATT 410
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 357 CTTTTGTTGTGATGCTGTGGATGGCTGGGTCGCTCGTAGATTCAACCAAGTTTCAACATT 416
Query 411 TGGAGCTGTTCTTGACATGGTCACAGATAGAGTTAGCACGGCTTGTCTTCTCGTGATTCT 470
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 417 TGGAGCTGTTCTTGACATGGTCACAGATAGAGTTAGCACGGCTTGTCTACTCGTGATTCT 476
Query 471 CTCTCAAATCTACAGGCCTAGTTTGGTCTTCCTCTCATTGCTGGCTTTAGATATTGCTAG 530
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 477 CTCTCAGATCTACAGGCCTAGCTTGGTCTTCCTCTCATTGCTGGCTTTAGATATTGCTAG 536
Query 531 TCATTGGCTGCAGATGTACAGTACGTTTCTAGCAGGGAAGAGCAGCCATAAGGATGTGAA 590
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TCACTGGCTGCAGATGTACAGTACGTTTCTAGCAGGGAAGAGCAGCCATAAGGATGTGAA 596
Query 591 AGACAGCACAAGCTGGCTTTTTAGACTCTACTATGGAAACCGGATATTTATGTGTTACTG 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 597 AGACAGCACAAGCTGGCTTTTTAGACTCTACTATGGAAACCGGATATTTATGTGTTATTG 656
Query 651 CTGTGTTTCTTGCGAGGTTCTGTATATCATCCTTCTTCTCATTGCAAAGAACCAATCTGA 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 657 CTGTGTTTCTTGCGAGGTTCTGTATATCATCCTTCTTCTCATTGCAAAGAACCAATCCGA 716
Query 711 AAATCTCCTGAATGTCGTAGTTGCTACATTAACACAGATTTCACCACTCTCTTTTCTCCT 770
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 717 AAATCTCCTGAATGTCGTAGTTACCACATTAACACAGATTTCACCACTCTCTTTTCTCCT 776
Query 771 GGCTTTGACATTGTTCGGTTGGTCGATGAAGCAGACCATTAATGTCATTCAGATGAAAAC 830
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 777 GGCGTTGACATTGTTCGGTTGGTCGATGAAGCAGACCGTTAATGTCATTCAGATGAAAAC 836
Query 831 TGCTGCAGACGTTTGTGTACTGTATGATATAGAGAAGCAGCAGAAGCCTTGATCATCTTC 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGCTGCAGACGTTTGTGTACTGTATGATATAGAGAAGCAGCAGAAGCCTTGATCATCTTC 896
Query 891 CTTTGTCTCAACCTGAAACTCttttt-tttCTTTCATTGTTTGTTCTCTTTTCACTGTGG 949
|||| |||||||||||||||||| || ||| ||| | ||||||| |||||||||||||||
Sbjct 897 CTTTTTCTCAACCTGAAACTCTTCTTCTTT-TTTAACTGTTTGTGCTCTTTTCACTGTGG 955
Query 950 ATGTAGATAATTGTTTTTAATGAAATGAAGAAATATTGATTTGCCTTTTGACAT 1003
||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 956 ATGTAGATAATTGTTTTTAATGAGATGAAGAAATATTGTTTTGCCTTTTGACAT 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37360458660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5