BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68010.2
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475922 jgi|Araly1|475922|fgenesh2_kg.2__1052__AT1G68010.1 2226 0.0
> Ahg475922 jgi|Araly1|475922|fgenesh2_kg.2__1052__AT1G68010.1
Length=1579
Score = 2226 bits (1205), Expect = 0.0
Identities = 1360/1432 (95%), Gaps = 22/1432 (2%)
Strand=Plus/Plus
Query 23 AACATATGAACCACA-CCAA--AAAAGAAC-AAAATCGTAGATAATGATCATGCAAAACC 78
||||||||||||||| | || |||| ||| |||| ||||||||||||||||||||||||
Sbjct 1 AACATATGAACCACATCAAATTAAAAAAACAAAAAACGTAGATAATGATCATGCAAAACC 60
Query 79 GACCGTTGGATCTTACTTTCGATTTCAAACCACATAAATCTTAGTGACTGAGCTAAAAAA 138
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 GACCGTTGGATCTTGTTTTCGATTTCAAACCACATAAATCCTAGTGACTGAGCTAAAAAA 120
Query 139 CTGAAATTTTTTAAAAGGCAAGACCTCCTCTGTTTCCATATTCTCACCACAGAAGAACTC 198
||||| |||||| |||||| | |||||| ||||||||||||| | ||| |
Sbjct 121 CTGAACTTTTTTTAAAGGC---A---------TTTCCAAATTCTCACCACAG-A-AACAC 166
Query 199 TTGAGGCTTTCTCTTTTCTCTACCATGGCGAAACCGGTGTCCATTGAAGTGTATAATCCT 258
|||| | |||||||||||||| ||||||| ||||||||| ||||||||||||||||||||
Sbjct 167 TTGAAGATTTCTCTTTTCTCTGCCATGGCAAAACCGGTGGCCATTGAAGTGTATAATCCT 226
Query 259 AATGGGAAATACAGAGTTGTTAGCACAAAACCGATGCCTGGAACTCGCTGGATCAATCTC 318
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 227 AATGGGAAATACAGAGTTGTTAGCACAAAACCGATGCCGGGTACTCGCTGGATCAATCTT 286
Query 319 TTGGTAGACCAAGGTTGTCGCGTTGAGATATGTCATTTGAAGAAGACAATCTTGTCTGTA 378
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 287 TTGGTAGACCAAGGTTGTCGCGTTGAGATATGTCATTTGAAGAAGACGATCTTGTCTGTA 346
Query 379 GAAGATATCATTGATCTGATCGGAGACAAGTGTGATGGAGTCATCGGTCAGTTGACGGAA 438
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 347 GAAGATATCATTGATCTGATCGGAGACAAGTGTGATGGAGTCATTGGTCAGTTGACGGAA 406
Query 439 GATTGGGGAGAGACTCTGTTCTCAGCTTTGAGCAAAGCTGGAGGGAAAGCTTTCAGTAAC 498
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 407 GATTGGGGAGAGACTCTGTTTTCAGCTCTGAGCAAAGCTGGAGGGAAAGCTTTCAGTAAC 466
Query 499 ATGGCCGTTGGTTATAACAACGTTGATGTTGAAGCTGCCAATAAGTATGGAATTGCTGTC 558
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 467 ATGGCCGTTGGTTACAACAACGTTGATGTTGAAGCTGCCAATAAGTATGGAATTGCCGTC 526
Query 559 GGTAACACTCCGGGAGTGTTGACTGAGACGACGGCTGAACTAGCTGCTTCTCTTTCCTTG 618
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct 527 GGTAACACACCGGGAGTGTTGACTGAGACGACGGCCGAACTAGCTGCATCTCTTTCCCTG 586
Query 619 GCTGCTGCAAGAAGAATTGTTGAAGCCGACGAATTCATGAGAGGTGGCTTGTACGAGGGA 678
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 GCTGCTGCAAGAAGGATTGTTGAAGCCGACGAATTCATGAGAGGTGGCTTGTACGAGGGA 646
Query 679 TGGCTTCCTCATCTGTTTGTGGGGAACTTACTTAAAGGACAGACTGTTGGAGTTATTGGA 738
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 647 TGGCTTCCTCATCTGTTTGTGGGGAACTTACTTAATGGACAAACTGTTGGAGTTATTGGG 706
Query 739 GCTGGACGTATTGGATCTGCTTATGCTAGAATGATGGTGGAAGGGTTCAAGATGAATTTG 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GCTGGACGTATTGGATCTGCTTATGCTAGAATGATGGTGGAAGGGTTCAAGATGAATTTG 766
Query 799 ATCTACTTTGATCTTTACCAATCCACTCGTCTTGAGAAATTTGTGACAGCTTATGGACAG 858
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 767 ATCTACTTTGATCTTTACCAATCTACACGTCTTGAGAAATTTGTGACAGCTTATGGACAA 826
Query 859 TTCTTGAAAGCAAATGGAGAACAACCTGTGACATGGAAACGAGCTTCGTCCATGGAGGAG 918
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 TTCCTGAAAGCAAACGGAGAACAACCTGTGACATGGAAACGAGCTTCGTCCATGGAGGAG 886
Query 919 GTGCTGCGTGAGGCTGATCTGATAAGTCTTCACCCGGTGCTGGACAAAACCACTTACCAT 978
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GTGCTACGCGAGGCTGATCTGATAAGTCTTCACCCGGTGCTGGACAAAACCACTTACCAT 946
Query 979 CTTGTCAACAAGGAGAGGCTTGCCATGATGAAAAAGGTGGAAGCAATCCTTGTGAACTGC 1038
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 947 CTTGTCAATAAGGAGAGGCTTGCCATGATGAAAAAGG---AAGCAATCCTTGTGAACTGC 1003
Query 1039 AGCAGAGGTCCTGTGATCGATGAGGCAGCTTTGGTCGAACATCTCAAAGAGAACCCGATG 1098
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1004 AGCAGAGGTCCTGTCATCGATGAGGCAGCTCTGGTCGAACATCTCAAAGAGAACCCGATG 1063
Query 1099 TTCCGAGTTGGTCTCGATGTGTTCGAGGAAGAGCCATTCATGAAACCAGGGCTTGCTGAT 1158
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1064 TTCCGAGTTGGTCTCGATGTGTTTGAGGAAGAGCCATTCATGAAACCAGGGCTTGCTGAT 1123
Query 1159 ACGAAAAACGCTATTGTTGTTCCTCACATTGCTTCTGCTTCCAAGTGGACTCGTGAAGGA 1218
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 ATGAAAAACGCTATTGTTGTTCCTCACATTGCTTCTGCTTCCAAGTGGACTCGTGAAGGA 1183
Query 1219 ATGGCTACGCTTGCAGCTCTCAACGTCCTCGGAAGAGTCAAAGGGTACCCGATTTGGCAT 1278
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1184 ATGGCTACACTTGCAGCTCTCAACGTCCTCGGAAGAGTCAAAGGGTATCCGATTTGGCAT 1243
Query 1279 GACCCGAACCGAGTCGATCCATTCTTGAACGAAAACGCTTCACCGCCCAATGCCAGTCCA 1338
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 GACCCGAATCGAGTGGATCCATTCTTGAACGAAAACGCTTCACCGCCCAATGCCAGTCCA 1303
Query 1339 AGCATCGTCAACTCAAAGGCCTTAGGATTGCCTGTTTCGAAGCTATGAGTTAAGTATGAA 1398
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 AGCATCGTCAACTCAAAAGCCTTAGGATTGCCTGTTTCGAAGCTATGAGTTAAGTATGAA 1363
Query 1399 GAAGGGGAGATTTGGAAGAATCCTTTTA-GTGAATATATGATGGTGTCAAGT 1449
|||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1364 GAAGGGGAGATTTGGAAGAATCGTTTTAAGTGAATATATGATGGTGTCAAGT 1415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54202418635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5