BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68030.1
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339050 jgi|Araly1|339050|fgenesh1_pg.C_scaffold_2001149 665 0.0
> Ahg339050 jgi|Araly1|339050|fgenesh1_pg.C_scaffold_2001149
Length=909
Score = 665 bits (360), Expect = 0.0
Identities = 467/516 (91%), Gaps = 17/516 (3%)
Strand=Plus/Plus
Query 106 ATGGAGCCTCCGAATTCAAACAGTGTCTGTGATCGCTTTGTGACTGGGAATTTAGACCTT 165
|||||||||| ||| ||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGCCTCTGAAGTCAGACAGTTTATGTGATCGCTTTGTGACTGGGAATTTAGACCTT 60
Query 166 GATAACTGGATTTGGATTATTGAGTACTTTGCCAAATTCAAAACTGAGCTTTGGATGTTA 225
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GATAACTGGATTTGGGTTATTGAGTACTTTGCGAAATTCAAAACTGAGCTTTGGATGTTA 120
Query 226 AATGATGTCTTTGAATTGGCTCCTAAGCTTCCAGATTATTTGGGTGAATATACAAATGAG 285
|||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 AATGATGTGTTTGAAATGGCTCCTAAGCTTCCAGATTATTTGGGTGAATATACCAATGAG 180
Query 286 ATGGTAGCTTTCAGATGCCTAGCTTCTTTGTTTGATTCTCATGTTGTTTCTGTtactact 345
|||||||||||||||||| ||||||||||||||| |||| || ||||||||| | |
Sbjct 181 ATGGTAGCTTTCAGATGCTTAGCTTCTTTGTTTGCTTCTGATCTTGTTTCTG--A--A-- 234
Query 346 actactactactacCTCAATGATCGAGTTTGATTCCTCTGAGAGCTGTGAATATGTACTC 405
|| ||| | | || ||||||||||||||| |||||||||||||||||||||||
Sbjct 235 GCT--GACT-C-A----AA-GATCGAGTTTGATTCGTCTGAGAGCTGTGAATATGTACTT 285
Query 406 CAATGTATCTTAGATGAGATACCGTTATCGGAACTGAAACCGGGTGCACCGGGTTTAACG 465
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 286 CAATGTATCTTGGATGAGATACCTTTATCGGAACTGAAACCGGGTGCACCGGGGTTATCG 345
Query 466 AAGTGGAATCTTCAACCTTTTATCAAACA-CAAGCTTCTTTCTCTACCAAAATGTGCTTT 524
||||||||| ||||||| ||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 346 AAGTGGAATGTTCAACCCTTTATCAAA-AGCAAGCTTCTTTGTCTACCAAAATGTGCTTT 404
Query 525 GGAACTGATGATTGAACCATCATCATGTGAGAATGATACTCAAGTGTCTCCTTGTAGTGA 584
||||||||||||||||||||| || | ||||||||||||| || |||||||||||| |||
Sbjct 405 GGAACTGATGATTGAACCATCTTCCTCTGAGAATGATACTGAAATGTCTCCTTGTAATGA 464
Query 585 GGAAGAGACTCTGAGAAGTGATGGCAAAGAGAATGA 620
|||||||||||||||||||||||||||||||| |||
Sbjct 465 GGAAGAGACTCTGAGAAGTGATGGCAAAGAGACTGA 500
Score = 449 bits (243), Expect = 1e-125
Identities = 319/354 (90%), Gaps = 11/354 (3%)
Strand=Plus/Plus
Query 698 ATGAGTTGCTCGATAGAAGAAATGCCGGATTTCGATATGAAAGCGAAAATGATGGTAGTC 757
||||||||||||| |||||||| | |||| |||||||| | |||| ||| | |||
Sbjct 566 ATGAGTTGCTCGAAAGAAGAAACGAGGGATATCGATATG--A---AAAA-GAT-G--GTC 616
Query 758 ATTTGTCAAGTCCTGTAGAGAAAATATACAGATGTGTTAACTGCAAAGAAAGTGGGAAGC 817
|||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 617 ATTTGTCAAGTCTTGCAGAGAAAATATACAGATGTGTTAAATGCAAAGAAAGTGGGAAGC 676
Query 818 TGTTGTTTTGCTCTAGTGATGGCTGTGAAGTCATGGTTCATCAGAAGTGTTTGGATTCAC 877
||||||||||||||||| ||||||| ||||| ||||||||||||| |||||||||||||
Sbjct 677 TGTTGTTTTGCTCTAGTCATGGCTGCCAAGTCCTGGTTCATCAGAAATGTTTGGATTCAC 736
Query 878 CACCTTCTTACCATGATGCTGGAGACTTTTACTGCTCTCTCTGCGCT-TTAACCTGTCCT 936
||||||||||| ||||||||||| | ||||||||||||||||| ||| || || ||| ||
Sbjct 737 CACCTTCTTACGATGATGCTGGAAATTTTTACTGCTCTCTCTGTGCTATT-ACTTGTGCT 795
Query 937 TCAGCTGAATATGTTCAATTTCAAGATGAAGTGGCTAAAGCAAAGAGGAAATTAGTTTCG 996
||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||
Sbjct 796 TCAGCTGAATATGTTCAATCTCAAGATGAAGTGGCTAAAGCTAAGAAGAAACTAGTTTCG 855
Query 997 TTTCTTAGACTAATGTCAGAGGTTAACAAGAAGAAATCTATTGAAGGAACCTGA 1050
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 856 TTTCTTAGACTAATGTCAGAGGTTAACAAGAAGAAATCTATTGAGGGAACCTGA 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39075989925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5