BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68040.1
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475920 jgi|Araly1|475920|fgenesh2_kg.2__1050__AT1G68040.1 1677 0.0
> Ahg475920 jgi|Araly1|475920|fgenesh2_kg.2__1050__AT1G68040.1
Length=1091
Score = 1677 bits (908), Expect = 0.0
Identities = 1033/1094 (94%), Gaps = 5/1094 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAAAGTGGAGATTGTTCGTAACTCACTTCCTATGAGTGGGGGAGATGGTCCGAAC 60
||||| |||||||||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGGGAAAGTGGAGATTGTTCTTAATTCACTTCCTATGAGTGGAGGAGATGGTCCGAAC 60
Query 61 AGCTACTCTAAGAATTCTCATTTGCAGAGAAAAACAACAAGTTTGTTGAAAGAGAAAATA 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 61 AGCTACTCTAAGAATTCTCATTTGCAGAGAAGAACAACAAGTTTGTTGAAAGAGACAATA 120
Query 121 GACAAACTGGTATTAGAGAAACTCAATGCAAAAACCCTAATCTCATCTGACTCCAACACA 180
|||||| || |||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 121 GACAAATTGATATTAGAGAAACTCAATGCAAAAACCCTAA--TC-TCTGACTCCAACACA 177
Query 181 TTCCGGATAGCCGATCTTGGTTGTGCAACTGGACCAAATACATTCTTTCTCGTTGACAAC 240
|||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct 178 TTCCACATAGCCGATCTTGGTTGTGCAACAGGACCAAACACATTCTTTCTCGTTGACGAC 237
Query 241 ATCATCAAATCCATTGAAACCAGCTTAAGAAAATCAAACTCGTCAAAACCAGAGTTTCTT 300
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 ATCATCAAATCCGTTGAAACCAGCTTAAGAAAATCAAACTCCTCAAAACCAGAGTTTCTT 297
Query 301 GTCTTCTTCAACGACCTCCCACAAAACGACTTCAACACTCTCTTCACATCTCTCCCTCAA 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 298 GTCTTCTTCAACGACCTCCCACAAAATGACTTCAACACTCTCTTCACATCTCTCCCTCAA 357
Query 361 GACCGGAGTTACTTGGCGGTCGGAGTCCCGGGTTCGTTCTACGGCCGTGTCCTTCCTCAA 420
|||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 358 GACCGGAGTTACTTCGCGGTCGGGGTCCCGGGTTCGTTCTATGGCCGTGTTCTTCCTCAA 417
Query 421 TCCTCCGTTCATATTGTAGTGACGA-TGGGGGCCACACACTGGCTATCGAGTGTACCAAA 479
|||||||||||||| |||||||| | | ||||||||||| |||||||||||||| || ||
Sbjct 418 TCCTCCGTTCATATGGTAGTGAC-AGTTGGGGCCACACATTGGCTATCGAGTGTTCCGAA 476
Query 480 AGAGGTGTTGGACAAAAGCTCCAAGGCGTGGAATAAAGGCAAGGTTCACTACTCAAATGC 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GGAGGTGTTGGACAAACCCTCCAAGGCGTGGAATAAAGGCAAGGTTCACTACTCAAATGC 536
Query 540 CGCGGATGAAGTTGTGAAGGCTTATAGAGATCAGTTTGGTCGGGACATGGAGAAGTTTCT 599
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CGCGGAGGAAGTTGTGAAGGCTTATAGAGATCAGTTTGGTCGGGACATGGAGAAGTTTCT 596
Query 600 AGAAGCTAGGGCTACAGAAATAGTAAGTGGAGGTCTTTTGGTTGTTGGAATGTGTGGGAT 659
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 597 AGAAGCTAGAGCTAAAGAAATAGTAAGTGGAGGTCTTTTGGTTGTTGGAATGTGTGGTAT 656
Query 660 TCCTAAAGGAATGCCTTTCTCCAATCTTGCCGACAGTATCATGTATACGTCCATGGCTGA 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ACCTAAAGGAATGCCTTTCTCCAATCTTGCCGACAGTATCATGTATACGTCCATGGCTGA 716
Query 720 TGTTCTCACTCAAATGCATTCCGAGGGTTTGATCAGCGAAGAGCAAGTCGATACCTTCAA 779
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 717 TGTTCTCACTCAAATGCAATCCCAGGGTTTGATCAGCGAAGAGCAAGTCGATACCTTTAA 776
Query 780 CATACCTATCTACTCAGCAACGCCTGAGGAGGTAACAGTCCTGGTAGTGAAAAATGGATG 839
||||||||| ||||| ||| |||||||||||||||||||| |||| | ||||||||||||
Sbjct 777 CATACCTATATACTCGGCATCGCCTGAGGAGGTAACAGTCTTGGTCGAGAAAAATGGATG 836
Query 840 CTTCACTGTCGAATCTATGGAGCTGATGGACCCAACGGCCTGGCTCAAACGGCCGACGAA 899
||||||||||| ||| |||||||||||| |||| |||||||||||||||||||| | |||
Sbjct 837 CTTCACTGTCGCATCGATGGAGCTGATGAACCCCACGGCCTGGCTCAAACGGCCAATGAA 896
Query 900 CGTGGAGGATGTTAGGCATTGGATGGTTTGCATAAAGGCAACAATGGGATCTCTCTTCAT 959
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 897 CGTGGAGGATGTTAGGCATTGGATGGTTTGCATAAAGGCCACAATGGGATCTCTCTTCAT 956
Query 960 CAACCATTTTGGTGAACATCTCCTCGACGATGTCTTCGACCGTCTCACCGCAAAACTGGT 1019
||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 957 CAACCATTTCGGTGAACATCTCCTTGACGAAATCTTCGACCGTCTCACCGCAAAACTTGT 1016
Query 1020 TGGACTCACCGAGAAAATTGAATCCAGCTACCGTGAGAAGGTCATGTTGTTCTTTGCGTT 1079
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1017 TGGACTCACCGAGAAGATTGAATCTAGCTACCGTGAGAAGGTCATGTTGTTCTTTGCGTT 1076
Query 1080 GCAACGAAAATAAA 1093
||||||||||||||
Sbjct 1077 GCAACGAAAATAAA 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40982135775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5