BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68050.1
Length=2113
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475919 jgi|Araly1|475919|fgenesh2_kg.2__1049__AT1G68050.1 3070 0.0
> Ahg475919 jgi|Araly1|475919|fgenesh2_kg.2__1049__AT1G68050.1
Length=2063
Score = 3070 bits (1662), Expect = 0.0
Identities = 1960/2097 (93%), Gaps = 47/2097 (2%)
Strand=Plus/Plus
Query 30 AGAAGAAGAAGATATTTCTGTAA--GCGAGAAAA-ATGGCGAGAGAACATGCGATCGGAG 86
|||||||||||||| || | || ||||||||| || |||| | | || |||||||||
Sbjct 1 AGAAGAAGAAGATA-TT-TAAAATGGCGAGAAAACAT-GCGACTG-A-AT-CGATCGGAG 54
Query 87 AAGCCACCGGAAAACGAAAGAAACGCGGCAGAGTTGAAGAAGCA-GAAGAATACTGTAAC 145
||| ||||||||||||||| |||||||||||||||||||||| | || | || | | |
Sbjct 55 AAGTCACCGGAAAACGAAAAAAACGCGGCAGAGTTGAAGAAGAAGGAGGCAT-C--T-AT 110
Query 146 GATGGAATCGAAGAA-C-A-A-GTAG-AG--GATGAGAAGCTTCCGTTAGAGGTTG-GGA 197
|||||||||||| || | | | |||| || |||| ||||||||| ||||| | || |||
Sbjct 111 GATGGAATCGAA-AACCAAGATGTAGTAGAAGATGGGAAGCTTCCATTAGAAG-TGAGGA 168
Query 198 TGTTCTATTACCCAATGACTCCGCCTTCGTTCATTGTTTCCGATGCTCTGGAGCCAGATT 257
|| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 169 TGGTCTATTACCCAGTGACTCCTCCTTCGTTCATTGTATCCGATGCTCTGGAGCCAGATT 228
Query 258 TTCCTTTGATCTATGTCAACAGAGTCTTCGAAGTCTTCACTGGCTATCGTGCCGATGAAG 317
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 229 TTCCTTTGATCTATGTCAACAGAGTCTTCGAAGTCTTCACTGGTTATCGTGCCGATGAAG 288
Query 318 TTCTTGGTCGTAACTGTCGATTCCTACAGTACAGAGATCCTCGAGCTCAAAGGCGTCACC 377
|||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct 289 TTCTTGGTCGTAACTGTCGATTTTTACAGTATAGGGATCCTCGAGCTCAAAGGCGTCACC 348
Query 378 CATTGGTTGATCCTGTGGTTGTATCTGAGATTAGGAGATGTCTTGAAGAAGGTATTGAAT 437
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 349 CATTGGTTGATCCTGTTGTTGTATCTGAGATAAGGAGATGTCTTGAAGAAGGTATTGAAT 408
Query 438 TCCAAGGAGAGCTTCTTAATTTCAGAAAAGATGGTACTCCTTTGGTTAACAGACTACGGC 497
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 409 TCCAAGGAGAGCTTCTCAATTTCAGAAAGGATGGTACTCCGTTGGTTAACAGACTACGGC 468
Query 498 TTGCTCCAATACGTGACGATGATGGAACCATTACACACGTAATTGGGATACAGGTCTTCT 557
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 469 TTGCTCCAATACGTGACGATGATGGAACGGTTACACATGTAATTGGGATACAGGTCTTCT 528
Query 558 CTGAAACGACTATAGACCTTGACCGTGTCTCGTATCCTGTGTTCAAACATAAACAACAGC 617
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 529 CTGAAACGACTATAGACCTTGAGCGTGTTTCATATCCTGTGTTCAAACATAAACAACAGC 588
Query 618 TTGATCAAACATCTGAGTGCTTGTTTCCAAGTGGAAGCCCGAGGTTTAAGGAGCATCATG 677
||||||| |||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 589 TTGATCAGACATCTCAGTGCTTGCTTCCAGGTGGAAGCCCGAGGTTTAAGGAGCATCATG 648
Query 678 AAGATTTCTGTGGGATATTGCAGCTATCTGATGAAGTTTTGGCTCATAACATCTTATCTC 737
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 649 AAGATTTCTGTGGGATATTGCAGCTGTCTGATGAAGTCTTGGCGCATAACATCTTATCTC 708
Query 738 GGTTAACTCCAAGGGACGTTGCTTCAATTGGTTCTGCTTGCAGGAGGTTGAGGCAGTTGA 797
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 709 GGTTAACTCCAAGAGACGTTGCTTCAATTGGTTCTGCCTGCAGGAGGTTGAGGCAGTTGA 768
Query 798 CGAAGAACGAGAGTGTGAGGAAGATGGTATGTCAGAATGCGTGGGGAAAAGAGATAACTG 857
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 769 CGAAAAACGAGAGCGTGAGGAAGATGGTGTGTCAGAATGCGTGGGGAAAAGAGATAACTG 828
Query 858 GAACACTGGAGATTATGACTAAGAAGCTAAGATGGGGTCGGTTAGCTAGAGAGCTCACCA 917
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 829 GAACACTGGAGATTATGACTAAGAAGCTAGGATGGGGTCGGTTAGCTAGAGAGCTCACCA 888
Query 918 CTCTTGAAGCTGTGTGTTGGCGTAAATTTACTGTTGGAGGGATTGTACAACCTTCCCGCT 977
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 889 CTCTTGAAGCTGTCTGTTGGCGCAAATTTACTGTTGGAGGGATTGTACAACCTTCCCGCT 948
Query 978 GCAATTTCAGCGCGTGTGCTGTTGGGAACCGGCTTGTGCTATTTGGTGGGGAAGGGGTTA 1037
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 949 GCAATTTCAGCGCGTGTGCTGTTGGGAACCGGCTTGTGCTATTTGGCGGGGAAGGGGTTA 1008
Query 1038 ACATGCAGCCATTGGATGATACTTTTGTTCTCAATCTTGATGCAGAGTGTCCTGAGTGGC 1097
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1009 ACATGCAGCCATTGGATGATACTTTTGTTCTCAATCTTGATGCAGAGTATCCTGAGTGGC 1068
Query 1098 AGCGTGTGAGGGTGACGTCGTCGCCTCCAGGACGTTGGGGACACACACTCTCGTGTCTCA 1157
| |||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 1069 AACGTGTGAGGGTGACATCCTCGCCTCCAGGACGTTGGGGACACACTCTCTCGTGTCTCA 1128
Query 1158 ACGGGTCGTGGTTGGTAGTCTTTGGAGGGTGTGGAAGACAAGGATTGCTTAATGATGTAT 1217
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1129 ACGGGTCGTGGTTAGTAGTCTTTGGAGGGTGTGGAAGACAAGGATTGCTTAATGACGTAT 1188
Query 1218 TTGTGCTTGATCTAGACGCTAAGCATCCCACATGGAAGGAAGTAGCAGGAGGAACTCCTC 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 TTGTGCTTGATCTAGACGCTAAGCATCCCACATGGAAGGAAGTAGCAGGAGGAACTCCTC 1248
Query 1278 CATTGCCAAGATCTTGGCACAGCTCGTGCACCATTGAGGGCTCTAAACTGGTTGTCTCAG 1337
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1249 CATTGCCAAGATCTTGGCACAGCTCGTGCACCATTGAAGGCTCTAAACTGGTTGTCTCAG 1308
Query 1338 GTGGCTGCACAGACGCTGGAGTGCTTCTCAGCGACACCTTCTTGTTGGATCTGACAACAG 1397
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1309 GTGGCTGCACAGACGCTGGGGTGCTTCTCAGCGACACCTTCTTGTTGGATTTGACAACAG 1368
Query 1398 ATAAACCGACATGGAAAGAGATCCCGACATCATGGGCTCCTCCTTCTAGACTTGGGCATT 1457
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1369 ATAAACCGACATGGAAAGAGATCCCAACATCATGGGCTCCTCCTTCTAGACTTGGGCATT 1428
Query 1458 CTTTATCGGTCTTTGGTCGGACTAAAATCCTAATGTTTGGCGGGCTTGCAAATAGTGGTC 1517
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1429 CTCTATCGGTCTTTGGTCGGACTAAAATCCTAATGTTTGGCGGACTTGCAAATAGCGGTC 1488
Query 1518 ATCTAAAGCTAAGGTCAGGGGAGGCATACACTATAGACTTGGAGGATGAAGAACCAAGAT 1577
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 ATCTAAAGTTAAGGTCAGGGGAGGCATACACTATAGACTTGGAGGATGAAGAACCAAGAT 1548
Query 1578 GGAGAGAGCTTGAGTGTAGCGCATTCCCAGGCGTGGTTGTACCGCCTCCAAGACTAGACC 1637
|||||||||||||||||||||| ||| |||||| |||||||||||||||||||| ||||
Sbjct 1549 GGAGAGAGCTTGAGTGTAGCGCGTTCACAGGCGCAGTTGTACCGCCTCCAAGACTGGACC 1608
Query 1638 ATGTGGCTGTGAGCATGCCGTGTGGTAGGGTCATCATCTTTGGAGGGTCGATTGCAGGGC 1697
| ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 1609 ACGTGGCTGTGAGCATGCCATGCGGTAGGGTCATCATCTTTGGAGGGTCTATTGCAGGGC 1668
Query 1698 TTCACTCTCCTTCGCAACTGTTTCTAATAGATCCTGCAGAAGAGAAACCGTCATGGAGGA 1757
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1669 TTCACTCTCCTTCACAACTGTTCCTTATAGATCCTGCAGAAGAGAAACCGTCATGGAGGA 1728
Query 1758 TCCTGAATGTCCCCGGG-AAACCGCCTAAGTTAGCTTGGGGACATAGCACATGCGTTGTT 1816
||||||||| ||||||| ||||| || || ||||||||||||||||||||||||||||||
Sbjct 1729 TCCTGAATG-CCCCGGGGAAACCACCCAAATTAGCTTGGGGACATAGCACATGCGTTGTT 1787
Query 1817 GGAGGAACTAGAGTATTGGTCCTTGGTGGTCACACTGGTGAGGAATGGATACTCAATGAA 1876
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1788 GGAGGAACTAGAGTTTTGGTCCTTGGTGGTCACACTGGTGAGGAATGGATACTCAGTGAA 1847
Query 1877 TTACATGAACTCTGCTTGGCTAGCCGGCAAGACTCGGATCTGTAAAGACTCTTTCCTTCT 1936
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1848 TTACATGAACTCTGCTTGGCTAGCCGCCAAGACTCAGATCTGTAAAGTCTCTTTCCTTCT 1907
Query 1937 TCATTTGGTTTGTGGTTTTGTATCTGTCACATTCCAAACTCTTACGACATGTAGAAGAGA 1996
||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||
Sbjct 1908 TCATTTGGTTTGTGGTTTTGTGTATGTCACATTCCAAACTCTTACTACATGTAGAAGAGA 1967
Query 1997 TATATCAGAAGCTAGAAGCGTGTGTACATAGTAAATTAGTGATTGTTGTACGCTTTAGAT 2056
| | | | | ||| |||||||||||||||||||||||| ||||||||
Sbjct 1968 T----C-G----T-G-----TGT--ACATAGTAAATTAGTGATTGTTGTGCGCTTTAG-- 2008
Query 2057 AGATATTCATGTAATGTTAATGGTTTTGCTGTATGAAGATCCTTCTATAATATACTT 2113
| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 2009 -G-TATTCATGTAATGTTAATGGTTTTGCTGTATGAAGATCCTTTTATAGTATACTT 2063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79494341315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5