BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68070.1
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475916 jgi|Araly1|475916|fgenesh2_kg.2__1046__AT1G68070.1 1858 0.0
> Ahg475916 jgi|Araly1|475916|fgenesh2_kg.2__1046__AT1G68070.1
Length=1265
Score = 1858 bits (1006), Expect = 0.0
Identities = 1187/1272 (93%), Gaps = 22/1272 (2%)
Strand=Plus/Plus
Query 1 TTTTGACTTTTGAGTGGTACTGATAGGTAC-AAGAAACACAACAAACCCTAGATTTATCT 59
|||||||||||||||||||||||||||||| ||| || || |||||||||||||||||||
Sbjct 1 TTTTGACTTTTGAGTGGTACTGATAGGTACAAAG-AA-AC-ACAAACCCTAGATTTATCT 57
Query 60 TCATCTCTCTCAATTCTGTATCAAGCAAAGACGGATTCAACGATGTCTTCACCTGAATCA 119
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 58 TCATCTCTCTCAATTCTGTGTCAAGCGAAGACGGATTCAACGATGTCTTCACCTGAATCA 117
Query 120 CCTTCCGGTTCCGACTCATCCACACCACTTCTCCGTTCACGGCAATCATCACCACGTCGT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CCTTCCGGTTCCGACTCATCCACACCACTTCTCCGTTCACGGCAATCATCACCACGTCGT 177
Query 180 CAACCTGTAATCGCGGTTCTATTAAATCGAGCTTCAGGACGACGAGGAGCTTCGATGGTG 239
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 178 CCACCTGTAATCGCGGTTCTATTAGGTCGAGCTTCAGGACGACGAGGAGCTTCGATGGTG 237
Query 240 GTTAGAGAAACAGCTGCACAAGAGCTTGAAGAGCGACGAGCTGATTGGGGTTACTCGAAA 299
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GTTAGAGAGACAGCTGCTCAAGAGCTTGAAGAGCGACGAGCTGATTGGGGTTACTCGAAA 297
Query 300 CCTGTTGTTGCTTTGGATATGCTTTGGAACACTGCTTTTGTTCTTGTTGCGATTGTTATG 359
|| |||||||||||||| ||||||||||||||||| |||||| ||||||||||||| |||
Sbjct 298 CCCGTTGTTGCTTTGGACATGCTTTGGAACACTGCGTTTGTTGTTGTTGCGATTGTGATG 357
Query 360 CTTTTGGTTTTTAAAGAAGAGAAGCCAAATGTTCCTATTAGGATTTGGATCTGTGGTTAT 419
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 358 CTTTTGGTTTTTAAAGAAGAGAAGCCAAATGTTCCGATTAGGGTTTGGATCTGTGGTTAT 417
Query 420 GCGATTCAGTGTCTTGTTCATGTTGTCCTTGTTTGGCTTGAGTTTAGAAAGAGGAATGCT 479
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 418 GCGATTCAGTGTCTTGTTCATGTTGTGCTTGTTTGGCTTGAGTTTAGGAAGAGGAATGCT 477
Query 480 AGAAG-CAGACCTGGAGATTTAGAAGCTGCTCAAGCTAC-G--AATCAGGATAGTGAAGA 535
|| | | || |||| ||||||||||||||||||| | | | |||||||||||||| ||
Sbjct 478 AGGACTC-GAACTGGGGATTTAGAAGCTGCTCAAGGTTCTGGTAATCAGGATAGTGAGGA 536
Query 536 TGAAGACAACGATGAGAGGTTTCTGAGCACTAAGACTTGTGAATCAATGAACACTATAAT 595
||| || |||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 537 TGAGGATAACGATGAGAGGATTCTGAGCACTAAGACTTGTGAATCGATGAACACTATAAT 596
Query 596 ATCATTTGTCTGGTGGATTGTTGGATTCTACTGGCTTGTTTCTGGTGGTGATATCCTTCT 655
||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 597 ATCATTTATCTGGTGGATTGTTGGCTTCTACTGGCTTGTATCTGGTGGTGATATCCTTCT 656
Query 656 GCAAAACGCGACGCATTTGTATTGGTTAACCTTTGTTTTCCTTGCATTTGATGTGTTCTT 715
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 657 GCAAAATGCGACGCATTTGTATTGGTTAACCTTTGTTTTCCTTGCATTTGATGTGTT-TT 715
Query 716 T-GCCATCTTTTGCGTTGTGCTGGCATGTCTTATTGGAATCGCCCTCTGTTGTTGCCTAC 774
| |||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |
Sbjct 716 TCGCCATCTTTTGCGTTGTGTTGGCATGTCTTATCGGAATCGCCCTCTGTTGCTGCCTCC 775
Query 775 CTTGTATTATTGCTCTTCTTTACGCCGTCGCGGGGCAGGAGGGTGCATCAGAAGCAGATC 834
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 776 CTTGTATTATTGCTCTTCTTTACGCCGTTGCCGGGCAGGAGGGTGCATCAGAAGCAGATC 835
Query 835 TCAGCATCCTTCCCAAGTACAGGTTTCACACGATGAACAATGATGAAAAGCAAAGTGACG 894
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
Sbjct 836 TCAGCATCCTTCCCAAGTACAGGTTTCAGGCGCTGAACAATGATGAAAAGCAAAGTGATG 895
Query 895 GTGGTGGGAAAATGATACCTGTGGATGCAG-CGAGTGAGAATTTAGGAAACGAGCGTGTG 953
||||||||||||||||||| || || |||| | ||||||||||| ||||| || ||||||
Sbjct 896 GTGGTGGGAAAATGATACCCGTCGAGGCAGGC-AGTGAGAATTTGGGAAATGAACGTGTG 954
Query 954 CTTCTTCCCGAGGATGCTGACTGTTGTATATGTTTGAGTTCATATGAAGATGGAGCAGAG 1013
||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 955 CTTCTTCCCGAAGATGCTGACTGTTGCATATGTCTGAGTTCATATGAAGATGGAGCAGAG 1014
Query 1014 CTGGTCTCACTTCCTTGCAACCACCACTTTCATTCTACGTGCATTGTGAAATGGCTGAAA 1073
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1015 CTGGTCTCACTTCCTTGCAACCACCACTTTCATTCGACGTGCATCGTGAAATGGCTGAAA 1074
Query 1074 ATGAATGCGACATGTCCACTATGCAAGTTCAATATCCTCAAAGGTAATGAACAAGAATGA 1133
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1075 ATGAATGCGACATGTCCACTGTGCAAGTTCAATATTCTCAAAGGTAATGAACAAGAATGA 1134
Query 1134 AGTAATGTAGAGGAAACTTTTCTTCTTTTT--ATGTTGTGTTTCTTTTTGTTGTATATAG 1191
|||||| |||||||| |||||| ||||||| |||||||||| ||||||||||||| ||
Sbjct 1135 AGTAATATAGAGGAAGCTTTTCATCTTTTTTTATGTTGTGTTG-TTTTTGTTGTATAGAG 1193
Query 1192 AG--TAGAGAAAAAA--GAAAATGATTGTGTTGTTTGT--AAGTCATAAGACAGTTTGTT 1245
|| ||||||||||| |||||||||| ||| |||||| ||||||||||||| |||||
Sbjct 1194 AGAGTAGAGAAAAAAAAGAAAATGATTATGTCGTTTGTGTAAGTCATAAGACAAATTGTT 1253
Query 1246 TCTTTGTTGAAA 1257
||||||||||||
Sbjct 1254 TCTTTGTTGAAA 1265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49102317096
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5