BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G68080.1 Length=1489 Score E Sequences producing significant alignments: (Bits) Value Ahg926076 jgi|Araly1|926076|scaffold_201637.1 1784 0.0 > Ahg926076 jgi|Araly1|926076|scaffold_201637.1 Length=1210 Score = 1784 bits (966), Expect = 0.0 Identities = 1128/1208 (93%), Gaps = 4/1208 (0%) Strand=Plus/Plus Query 102 TACACAAACCGGAGAGACATGTCGGAGAAAGAGCACCCTCGGCTAATTCTACACAATTTC 161 ||||| ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| Sbjct 3 TACACGAACCGGAGAGATATGTCGGAGATAGAGCACCCTCGGCTTATTCTACACAATTTC 62 Query 162 CTGTCGCCGGCAGAATGCAAGGAACTTGAGCTT-ATACACAAGAGTAGCAGTACAATTGG 220 |||||||||||||| ||||| || |||||| || |||||||||||| ||||||||||||| Sbjct 63 CTGTCGCCGGCAGAGTGCAAAGAGCTTGAG-TTCATACACAAGAGTTGCAGTACAATTGG 121 Query 221 GTACAGACCAAATGTCTTCTCCACTACTCTCTCTCACCTCATTGCCACTAATTCTCCTCA 280 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122 TTACAGACCAAATGTCTTCTCCACTACTCTCTCTCACCTCATTGCCACTAATTCTCCTCA 181 Query 281 CCTCATCATCCCTTTTGTCTCCATTAGAGAGAGGTTGAAAGAGAAGATAGAGGAAACATT 340 |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 182 TCTCATCATCCCTTTCGTGTCCATTAGAGAGAGGTTGAAAGAGAAGATAGAGGAAACATT 241 Query 341 TGGGTGTGAGTATGAGCTTTTTATTGAATTCACAGGTTTGATTAGTTGGTGCAAAGGAGC 400 ||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 242 TGGGTGTGAGTTTGAGCTTTTTATTGAATTCACAGGTTTGATTAGTTGGTGTAGAGGAGC 301 Query 401 TAGCATTGGTTGGCATAGTGATGATAACAGATCATATCTAAAACAAAGAGATTTTGCGGC 460 ||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| ||||| Sbjct 302 TAGCATTGGGTGGCATAGTGATGATAACAGATCATATTTGAAACAAAGGGATTTCGCGGC 361 Query 461 AGTTTGTTACTTGAATAGTTACGAGAAAGATTTCATAGGCGGTCTTTTTCGTTTTCAGAG 520 ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||| Sbjct 362 AGTTTGTTACTTGAATAGTTACGGGAAAGATTTCAAAGGCGGGCTTTTTCGTTTTCAGAG 421 Query 521 TGGTGAACCAGTAACCGTTGCTCCATCGGCTGGTGATGTTATCATGTACACAGCTGATGA 580 ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 TGGAGAACCAGCAACCGTTGCTCCATCGGCTGGTGATGTTATCATGTACACAGCTGATGA 481 Query 581 CCGGAATATTCACTCAGTTGATGAGGTAACAGATGGAGAAAGATTGACTCTTGCACTCTG 640 || ||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 482 CCAGAACATTCATTCGGTTGATGAGGTAACAGATGGAGAAAGATTGACTCTTGCACTCTG 541 Query 641 GTTTAGCCGGGACTCATCACATGACGAAGATTCCAAGCTTCTTTCTCGTCTTTCACAATG 700 |||||||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||| Sbjct 542 GTTTAGCCGGGACTCATCCCATGACGAAGATGCCAAGCTTCTTTCCCGTCTTTCCCAATG 601 Query 701 TACATCACATGAAGTGTGCCTCCCTTTGCCTGCATCCACTAACATGTACTGGTTCTGTCC 760 |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 602 CACATCACATGGAGTTTGCCTCCCTTTGCCTGCATCTACTAACATGTACTGGTTCTGTCC 661 Query 761 TCATCAAGATGGTTCTAATCAAAACATAGGTTTTGATGTTTGCGTTGCGAGGTTGCATCT 820 ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 662 TCATCAAGATGTTTCTAATCAAAACATAGGTTTTGATATTTGCGTTGCGAGGTTGCATCT 721 Query 821 TCTTGGTTTTGATGTACATAGCTTACAAGGCGAAGATCATTCTACGGATGCCTCTGAACA 880 ||||||||| || || |||||||||||||||||||||||||||| ||||| ||| ||||| Sbjct 722 TCTTGGTTTCGACGTTCATAGCTTACAAGGCGAAGATCATTCTATGGATGGCTCAGAACA 781 Query 881 ACTTATGGGACCACTACAATTAGCTAAAGGAGGAAAGTTACTCACCCGAAAATTTGCCAA 940 ||| ||||| ||||||||||||||||||||| || ||||||||| || |||||||||||| Sbjct 782 ACTCATGGGGCCACTACAATTAGCTAAAGGAAGAGAGTTACTCATCCAAAAATTTGCCAA 841 Query 941 CATTCTTCATGCTCTTCAGGTTGTTCAGTTCTACCATTGGAAAGCTTCTGAACTCGTAAC 1000 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 842 CATTCTTCATGCTCTTCAGGTTGTTCAGTTCTACCATTGGAAAGCTTCTGAACTCAAAAC 901 Query 1001 TTCTAATGTCGAAAATGACACATTAGAAGAGGTGAAAGCTATGTCCCACTCTCAGTTGGA 1060 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 902 TTCTAATGTCGAAAATGACACGTTAGAAGAGGTGAAAGCTATGTCCCACTCTCAGTTGGA 961 Query 1061 AACTATCAATGCCCTGAAATCAGTTTTCCTGCTAGATGAGAACCTCGTAGCCACAACTTT 1120 ||||||| || ||||||||||||||||||||| |||||||||||||||| | |||| ||| Sbjct 962 AACTATCTATACCCTGAAATCAGTTTTCCTGCCAGATGAGAACCTCGTAACTACAATTTT 1021 Query 1121 TGGATATTCGTGCTCTGGTGAGGATCGAAAGGATTCACTCGACTTGACGGGTATAGCTC- 1179 ||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| ||| Sbjct 1022 TGGATATTCGTGCTCTGATGAGGATCGAAAGGATTCACTTGACTTGACGGCTATATCTCC 1081 Query 1180 TCGCGGTTACCTCTTGGGAAGAGTATAGCTGTAAGTTACTCAAGGAGCTATTATCATCCT 1239 | | | || |||||||||||||||||| | |||||||||||||||| |||||||| |||| Sbjct 1082 T-GTGATTCCCTCTTGGGAAGAGTATACCAGTAAGTTACTCAAGGAACTATTATCTTCCT 1140 Query 1240 TGCCTCAATGGAAAACTTATCAAACTATACACAAAGTGGAATCTGATTAGAAATGAATTC 1299 ||||||||||||||||||||||||||||||||||||| |||||||||||||||| || | Sbjct 1141 TGCCTCAATGGAAAACTTATCAAACTATACACAAAGTCGAATCTGATTAGAAATTTATCC 1200 Query 1300 TGAGTTAC 1307 ||||||| Sbjct 1201 CGAGTTAC 1208 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55726028435 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5