BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68080.1
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926076 jgi|Araly1|926076|scaffold_201637.1 1784 0.0
> Ahg926076 jgi|Araly1|926076|scaffold_201637.1
Length=1210
Score = 1784 bits (966), Expect = 0.0
Identities = 1128/1208 (93%), Gaps = 4/1208 (0%)
Strand=Plus/Plus
Query 102 TACACAAACCGGAGAGACATGTCGGAGAAAGAGCACCCTCGGCTAATTCTACACAATTTC 161
||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||||
Sbjct 3 TACACGAACCGGAGAGATATGTCGGAGATAGAGCACCCTCGGCTTATTCTACACAATTTC 62
Query 162 CTGTCGCCGGCAGAATGCAAGGAACTTGAGCTT-ATACACAAGAGTAGCAGTACAATTGG 220
|||||||||||||| ||||| || |||||| || |||||||||||| |||||||||||||
Sbjct 63 CTGTCGCCGGCAGAGTGCAAAGAGCTTGAG-TTCATACACAAGAGTTGCAGTACAATTGG 121
Query 221 GTACAGACCAAATGTCTTCTCCACTACTCTCTCTCACCTCATTGCCACTAATTCTCCTCA 280
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TTACAGACCAAATGTCTTCTCCACTACTCTCTCTCACCTCATTGCCACTAATTCTCCTCA 181
Query 281 CCTCATCATCCCTTTTGTCTCCATTAGAGAGAGGTTGAAAGAGAAGATAGAGGAAACATT 340
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TCTCATCATCCCTTTCGTGTCCATTAGAGAGAGGTTGAAAGAGAAGATAGAGGAAACATT 241
Query 341 TGGGTGTGAGTATGAGCTTTTTATTGAATTCACAGGTTTGATTAGTTGGTGCAAAGGAGC 400
||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 242 TGGGTGTGAGTTTGAGCTTTTTATTGAATTCACAGGTTTGATTAGTTGGTGTAGAGGAGC 301
Query 401 TAGCATTGGTTGGCATAGTGATGATAACAGATCATATCTAAAACAAAGAGATTTTGCGGC 460
||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| |||||
Sbjct 302 TAGCATTGGGTGGCATAGTGATGATAACAGATCATATTTGAAACAAAGGGATTTCGCGGC 361
Query 461 AGTTTGTTACTTGAATAGTTACGAGAAAGATTTCATAGGCGGTCTTTTTCGTTTTCAGAG 520
||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct 362 AGTTTGTTACTTGAATAGTTACGGGAAAGATTTCAAAGGCGGGCTTTTTCGTTTTCAGAG 421
Query 521 TGGTGAACCAGTAACCGTTGCTCCATCGGCTGGTGATGTTATCATGTACACAGCTGATGA 580
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TGGAGAACCAGCAACCGTTGCTCCATCGGCTGGTGATGTTATCATGTACACAGCTGATGA 481
Query 581 CCGGAATATTCACTCAGTTGATGAGGTAACAGATGGAGAAAGATTGACTCTTGCACTCTG 640
|| ||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CCAGAACATTCATTCGGTTGATGAGGTAACAGATGGAGAAAGATTGACTCTTGCACTCTG 541
Query 641 GTTTAGCCGGGACTCATCACATGACGAAGATTCCAAGCTTCTTTCTCGTCTTTCACAATG 700
|||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |||||
Sbjct 542 GTTTAGCCGGGACTCATCCCATGACGAAGATGCCAAGCTTCTTTCCCGTCTTTCCCAATG 601
Query 701 TACATCACATGAAGTGTGCCTCCCTTTGCCTGCATCCACTAACATGTACTGGTTCTGTCC 760
|||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 602 CACATCACATGGAGTTTGCCTCCCTTTGCCTGCATCTACTAACATGTACTGGTTCTGTCC 661
Query 761 TCATCAAGATGGTTCTAATCAAAACATAGGTTTTGATGTTTGCGTTGCGAGGTTGCATCT 820
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 662 TCATCAAGATGTTTCTAATCAAAACATAGGTTTTGATATTTGCGTTGCGAGGTTGCATCT 721
Query 821 TCTTGGTTTTGATGTACATAGCTTACAAGGCGAAGATCATTCTACGGATGCCTCTGAACA 880
||||||||| || || |||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 722 TCTTGGTTTCGACGTTCATAGCTTACAAGGCGAAGATCATTCTATGGATGGCTCAGAACA 781
Query 881 ACTTATGGGACCACTACAATTAGCTAAAGGAGGAAAGTTACTCACCCGAAAATTTGCCAA 940
||| ||||| ||||||||||||||||||||| || ||||||||| || ||||||||||||
Sbjct 782 ACTCATGGGGCCACTACAATTAGCTAAAGGAAGAGAGTTACTCATCCAAAAATTTGCCAA 841
Query 941 CATTCTTCATGCTCTTCAGGTTGTTCAGTTCTACCATTGGAAAGCTTCTGAACTCGTAAC 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 842 CATTCTTCATGCTCTTCAGGTTGTTCAGTTCTACCATTGGAAAGCTTCTGAACTCAAAAC 901
Query 1001 TTCTAATGTCGAAAATGACACATTAGAAGAGGTGAAAGCTATGTCCCACTCTCAGTTGGA 1060
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 902 TTCTAATGTCGAAAATGACACGTTAGAAGAGGTGAAAGCTATGTCCCACTCTCAGTTGGA 961
Query 1061 AACTATCAATGCCCTGAAATCAGTTTTCCTGCTAGATGAGAACCTCGTAGCCACAACTTT 1120
||||||| || ||||||||||||||||||||| |||||||||||||||| | |||| |||
Sbjct 962 AACTATCTATACCCTGAAATCAGTTTTCCTGCCAGATGAGAACCTCGTAACTACAATTTT 1021
Query 1121 TGGATATTCGTGCTCTGGTGAGGATCGAAAGGATTCACTCGACTTGACGGGTATAGCTC- 1179
||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| |||
Sbjct 1022 TGGATATTCGTGCTCTGATGAGGATCGAAAGGATTCACTTGACTTGACGGCTATATCTCC 1081
Query 1180 TCGCGGTTACCTCTTGGGAAGAGTATAGCTGTAAGTTACTCAAGGAGCTATTATCATCCT 1239
| | | || |||||||||||||||||| | |||||||||||||||| |||||||| ||||
Sbjct 1082 T-GTGATTCCCTCTTGGGAAGAGTATACCAGTAAGTTACTCAAGGAACTATTATCTTCCT 1140
Query 1240 TGCCTCAATGGAAAACTTATCAAACTATACACAAAGTGGAATCTGATTAGAAATGAATTC 1299
||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct 1141 TGCCTCAATGGAAAACTTATCAAACTATACACAAAGTCGAATCTGATTAGAAATTTATCC 1200
Query 1300 TGAGTTAC 1307
|||||||
Sbjct 1201 CGAGTTAC 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55726028435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5