BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68090.1
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315818 jgi|Araly1|315818|fgenesh1_pm.C_scaffold_2000851 1604 0.0
> Ahg315818 jgi|Araly1|315818|fgenesh1_pm.C_scaffold_2000851
Length=951
Score = 1604 bits (868), Expect = 0.0
Identities = 923/950 (97%), Gaps = 2/950 (0%)
Strand=Plus/Plus
Query 1 ATGGCAACAATGAAAATACCAATGACGGTACCTTCTCCTCGAGTCGATGCTGACCAACTC 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGCAACAATGAAAATACCAATGACGGTACCTTCTCCTCGAATCGATGCTGACCAACTC 60
Query 61 TTTAAGGCCTTCAAAGGAAGAGGCTGCGATACTTCGGTGATCATCAACATCTTAGCTCAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTAAGGCCTTCAAAGGAAGAGGCTGCGATACTTCGGTGATCATCAACATCTTAGCTCAT 120
Query 121 CGCAATGCAACACAACGAGCTCTCATCGAACAAGAATACGAAACCAAATTCTCGGATGAC 180
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CGCAATGCAACGCAACGAGCTCTTATCGAACAAGAATACGAAACCAAATTCTCGGATGAC 180
Query 181 CTCCGAAAACGTCTCCACTCTGAGCTTCATGGTCATCTCAAGAAAGCCGTTCTTTTGTGG 240
|| |||||||||||||| || ||||||||||||||||||||||||||||||||| |||||
Sbjct 181 CTTCGAAAACGTCTCCAATCCGAGCTTCATGGTCATCTCAAGAAAGCCGTTCTTCTGTGG 240
Query 241 ATGCCTGAAGCAGTGGAGCGAGACGCTTCAATACTGAAACGCTCCTTAAGAGGAGCCGTG 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 ATGCCTGAAGCAGTGGAGCGAGACGCTTCAATACTGAAACGCTGCTTAAGAGGAGCCGTG 300
Query 301 ACTGATCATAAAGCGATTGCTGAGATTATATGCACACGATCTGGCTCTCAGCTTCGTCAG 360
|||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 ACTGATCACAAAGCGGTTGCTGAGATTATATGTACACGATCTGGCTCTCAGCTTCGTCAG 360
Query 361 ATCAAACAGGTCTACT-CAAACACTTTCGGTGTGAAACTTGAAGAGGACATCGAATCCGA 419
|||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 ATCAAACAGGTCTACTGC-AACACTTACGGTGTGAAACTTGAAGAGGACATCGAATCCGA 419
Query 420 AGCTTCTGGCAATCACAAAAGAGTTTTGCTCGCGTATTTGAACACTACGCGATATGAAGG 479
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 420 AGCTTCTGGCAATCACAAAAGAGTTTTGCTCGCATATTTGAACACTACACGATATGAAGG 479
Query 480 ACCAGAGATCGATAATGCGAGTGTAGAGAACGATGCTAGGACTCTCAAGAGCGCGGTTGC 539
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 480 ACCAGAGATCGATAATGCGAGTGTAGAGAACGATGCTAGGACTCTCAAGAGTGCAGTTGC 539
Query 540 AAGGAAGCATAAATCTGATGACCAGACGTTGATTCAGATATTCACTGACCGAAGCAGGAC 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAGGAAGCATAAATCTGATGACCAGACGTTGATTCAGATATTCACTGACCGAAGCAGGAC 599
Query 600 TCATTTGGTCGCTGTAAGATCTACTTACCGTTCCATGTACGGCAAAGAACTTGGAAAGGC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCATTTGGTCGCTGTAAGATCTACTTACCGTTCCATGTACGGCAAAGAACTTGGAAAGGC 659
Query 660 CATAAGAGATGAGACTCGCGGGAACTTCGAGCATGTCCTTCTAACAATTTTACAATGTGC 719
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 660 CATAAGAGATGAGACTCGCGGGAACTTCGAGCACGTCCTTCTAACAATTCTACAATGTGC 719
Query 720 TGAAAACTCTTGTTTCTATTTCGCAAAGGCATTGAGGAAATCAATGAAAGGATTAGGAAC 779
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 720 TGAAAACTCTTGTTTCTATTTCGCAAAGGCACTGAGGAAATCAATGAAAGGATTAGGAAC 779
Query 780 AGATGACACGGCGTTGATAAGAATCGTGGTGACGAGAGCAGAGGTGGATATGCAGTTCAT 839
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 780 AGATGACACGGCGTTGATAAGAATATTGGTGACGAGAGCAGAGGTGGATATGCAGTTCAT 839
Query 840 CATCACAGAATACCGTAAGAGATACAAGAAGACTTTGTACAATGCTGTTCATTCTGATAC 899
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CATCACAGAATACCGCAAGAGATACAAGAAGACTTTGTACAATGCTGTTCATTCTGATAC 899
Query 900 AACTAGTCATTACAGGACTTTTCTCCTCTCTCTTTTAGGCCCCAACGTTT 949
|||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 900 AACTGGTCATTACAGGACTTTTCTCCTCTCTCTTTTAGGACCCAACGTTT 949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35301821142
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5