BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68100.1
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339044 jgi|Araly1|339044|fgenesh1_pg.C_scaffold_2001143 1940 0.0
> Ahg339044 jgi|Araly1|339044|fgenesh1_pg.C_scaffold_2001143
Length=1203
Score = 1940 bits (1050), Expect = 0.0
Identities = 1153/1204 (96%), Gaps = 2/1204 (0%)
Strand=Plus/Plus
Query 329 ATGAAGTTGCCGGAGGAGCTTGCTGAAGAGGAGGATATGAGATTATGTGGGTTTGGGCCT 388
|||||| ||||||| ||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 1 ATGAAGCTGCCGGAAGAGCTTGCTGAGGAGGAGGATATGAGGTTGTGTGGGTTTGGGCCT 60
Query 389 TGTCTTCATGATCACGATCACGAATCAAGTTCCACTCTTACGGGGTTTGCTCTGTGGCTT 448
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 61 TGTCTTCATGATCATGATCACGAATCAAGTTCTACTCTTACCGGGTTTGCTCTGTGGCTT 120
Query 449 AATGCATTGGGATGCTCTCTTTTAGTTAGCTTGGCCTCACTCATCTGCCTTGTTTTGCTT 508
||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||
Sbjct 121 AATGCATTGGGATGCTCTCTTTTGGTTAGCTTAGCCTCACTCATCTGTCTGGTTTTGCTT 180
Query 509 CCCATTATGTTTGTTCAAGGGAAGCCATCAAAATGGTTCGTTGATTCTTTGGCTCTCTTT 568
||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 181 CCCATTATGTTTGTTCAAGGGAAGCCATCAAAAGGGTTCGTTGATTCTTTGGCTTTGTTT 240
Query 569 GGGGCAGGAGCTATGTTGGGAGATGCTTTTCTTCACCAACTGCCCCATGCTTTTGGTGGT 628
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 241 GGGGCAGGAGCTATGTTGGGGGATGCTTTTCTTCACCAATTGCCCCATGCTTTTGGTGGT 300
Query 629 GGCCACTCTCACTCTAATGATCACCATGAGAACCATGACCATCATGATCATTCTCATTCG 688
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTCACTCTCACTCTAATGATCACCATGAGAACCATGACCATCATGATCATTCTCATTCG 360
Query 689 GATTCGCCTTCACACTCACATTCTATACAAGATTTGTCTGTTGGATTGTCTGTTCTTGCT 748
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 361 GATTCACCTTCACACTCACATTCTATACAAGATTTGTCTGTTGGATTATCTGTTCTCGCT 420
Query 749 GGGATTGTGGTCTTCCTTCTTGTGGAGAAGTTGGTGCGGTATGTCGAAGAAAACTCATCT 808
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 GGGATTGTGGTCTTCCTTCTTGTGGAGAAGTTGGTGCGGTATGTCGAAGAAAACTCGTCT 480
Query 809 GGGTCCAATACTTGGGGTCATCATCACCACCACCACCATGCAGGCAGTAAGAAACTGAAG 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGGTCCAATACTTGGGGTCATCATCACCACCACCACCATGCAGGCAGTAAGAAACTGAAG 540
Query 869 GATGAAGGCGATCATAACAACTTGGACCAACAATCTTCTTCTGATGCAATTGTAAATTCA 928
||||||| |||||| ||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 541 GATGAAGACGATCAGAACAACTTGGACCAAAAATCTTCTTCTGATGAAATTGTAAATTCA 600
Query 929 TCAGAGAAAGTCTCTGGCGGCTCTACAGATAAATCTCTCCGTAAGAGAAAGACTTCTGCT 988
||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 601 TCAGAGAAAGTCTCTAGCGGCTCTACAGATGGATCTCTCCGTAAGAGAAAGAGTTCTGCT 660
Query 989 AGTGACGCTACTGATAAATCAGATTCAGGAACAGAAATTACTTC-CGATGGAAAATCGGA 1047
|||| ||| |||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 661 GGTGATGCTGCTGATAAATCAGATTCAGGAACAGAAATTACTTCTC-ATGGAAAATCGGA 719
Query 1048 CAAACCAGAACAGGTGGAGACGCGTTCTTCGAGCCTAGTCTTTGGTTACCTCAACTTGTT 1107
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 720 CAAACCAGAACAGGTGGAGACGCATTCTTCAAGCCTAGTCTTTGGTTACCTCAACTTGTT 779
Query 1108 CTCTGATGGTGTTCACAATTTCACTGATGGAATGGCATTAGGAAGTGCGTTTCTCATCTA 1167
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTCTGATGGTGTTCACAATTTTACTGATGGAATGGCATTAGGAAGTGCGTTTCTCATCTA 839
Query 1168 TGGATCAGTTGGTGGTTGGTCAAGAACTATGTTTTTACTTGCCCACGAGCTTCCCCAAGA 1227
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 840 TGGATCAGTTGGTGGTTGGTCAAGAACTATGTTTTTACTCGCCCACGAGCTTCCTCAAGA 899
Query 1228 GATAGGTGATTTTGGGATTCTAGTAAGATCAGGCTTCACAGTAACAAAAGCACTCTTCTT 1287
|||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||
Sbjct 900 GATAGGTGATTTTGGGATCCTAGTGAGGTCAGGCTTCACTGTAACAAAAGCACTCTTCTT 959
Query 1288 CAACTTCCTCTCTGCACTCGTCGCACTTGCCGGAACTGCATTGGTTTTGGTCTGGGGAAA 1347
|||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||
Sbjct 960 CAACTTCCTCTCTGCACTCGCCGCACTTGCAGGAACTGCATTGGTCTTGGTCTGGGGAAA 1019
Query 1348 TGAACCAGGACAATCATCGTTGATTGAGGGATTCACAGCGGGAGGATTCATATACATAGC 1407
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 TGAACCAGGACAATCATCGTTGATCGAGGGATTCACAGCGGGAGGATTCATATACATAGC 1079
Query 1408 TGTTGCTGGAGTTCTTGCAGAAATGAACAACTCGGGAAAATCAACACTTAAAAACAGTGC 1467
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1080 TGTTGCTGGTGTTCTTGCAGAAATGAACAACTCCGGAAAATCGACACTTAAAAACAGTGC 1139
Query 1468 CTGCCATTTGATATCTTTGATTCTTGGCATGAGTGTTGCTCTTTGCATCTCTCTTATAGA 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CTGCCATTTGATATCTTTGATTCTTGGCATGAGTGTTGCTCTTTGCATCTCTCTTATAGA 1199
Query 1528 ATGA 1531
||||
Sbjct 1200 ATGA 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62772723760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5