BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68110.1
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926073 jgi|Araly1|926073|scaffold_201634.1 1677 0.0
> Ahg926073 jgi|Araly1|926073|scaffold_201634.1
Length=1163
Score = 1677 bits (908), Expect = 0.0
Identities = 1098/1186 (93%), Gaps = 28/1186 (2%)
Strand=Plus/Plus
Query 162 TAGGAGGGAGGCGGCTCGGACGATGAAGCTGTGGAAACGAGCTGCCGCCGCAATCAAAGA 221
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAGGAGGGAGGCGGCT-TGACGATGAAGCTGTGGAAACGAGCTGCCGCCGCAATCAAAGA 59
Query 222 CCGGAAAAGCTTACTAGCCGTTGGTTTCTCACGGCGAAACAGCTCTTACCGGAACGCAGA 281
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 CCGGAAAAGCTTACTTGCCGTTGGTTTCTCACGGCGAAACAGCTCTTACCGGAACGCGGA 119
Query 282 TCTCGAAGCAGCTATCATCAAAGCCACCTCCCACGACGATTCCTCCGTCGACTATTCCAA 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 TCTCGAAGCAGCTATCATCAAAGCCACCTCCCACGACGATTCCTCCGTCGACTATTCAAA 179
Query 342 CGCTCACCGTGTCTACAAATGGATCCGTTCTTCTCCTCTTAATCTCAAGACTCTCGTCTA 401
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGCTCACCGTGTCTACAAATGGATCCGTTCTTCTCCTCTTAATCTCAAGACTCTCGTCTT 239
Query 402 CGCAATCTCTTCTCGCGTTAACCACACGCGTAGCTGGATCGTTGCTCTTAAATCCTTAAT 461
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 CGCAATCTCTTCTCGCGTTAACCACACGCGTAGCTGGATCGTTGCGCTTAAATCCTTAAT 299
Query 462 GCTTCTTCATGGTGTTCTCTGTTGTAAAGTACCTTCCGTTGTCGGAGAGTTTCGTCGTCT 521
||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||
Sbjct 300 GCTTCTTCATGGTGTTCTCTGTTGTAAAGTACCGTCCGTCGTTGGAGAAATTCGTCGTCT 359
Query 522 TCCTTTCGATCTTTCAGATTTCTCCGATGGTCATTCTTGTCTTAGCAAGACTTGGGGATT 581
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCCTTTCGATCTTTCCGATTTCTCCGATGGTCATTCTTGTCTTAGCAAGACTTGGGGATT 419
Query 582 CAACGTCTTTGTTCGAACTTACTTCGCTTTTCTTCATCATTACTCTTCCTTCTTGTCCGA 641
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 CAACATCTTTGTTCGAACTTACTTTGCTTTTCTTCATCATTACTCTTCCTTCTTGTCCGA 479
Query 642 TCAGATTCATCGTCTCCGTGGTAACAACAGAAGATCGTTGGAGAAGACATCTGATTCTGT 701
||||||||| || ||||| |||||||||||||||||||||||| | | ||||||||||||
Sbjct 480 TCAGATTCACCGCCTCCGCGGTAACAACAGAAGATCGTTGGAG-A-A-ATCTGATTCTGT 536
Query 702 TATCCAAGAGCTTGAACGGATTCAGAAACTCCAGTCTCTCCTAGATATGATTCTTCAGAT 761
||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||
Sbjct 537 GATCCAAGAGCTTGAACGGATTCAAAAACTCCAGTCGCTCTTAGATATGATTCTTCAGAT 596
Query 762 TCGACCTGTTGCTGACAACATGAAGAAGACTTTGATCTTAGAAGCTATGGATTGTCTCGT 821
||| ||| | || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCGGCCTATAGCCGACAATATGAAGAAGACTTTGATCTTAGAAGCTATGGATTGTCTCGT 656
Query 822 CATCGAAAGTATCAACATCTACGGTAGAATTTGCGGCGCGGTTATGAAAGTCCTTCCGTT 881
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 657 CATCGAAAGTATCAACATCTACGGTAGAATTTGCGGCGCGATTATGAAAATCCTTCCGTT 716
Query 882 GGCTGG-AAAATCAGAGGCTGCAACGGTTTTGAAAATCGTCAACAAGACCACATCTCAGG 940
|||||| |||| ||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 717 GGCTGGGAAAA-CAGAGGCTGCAACGGTTTTGAAAATCGTCCACAAGGCGACATCTCAGG 775
Query 941 GAGAAGATCTCATCGTCTATTTCGAATTCTGCAAAGGTTTCGGTGTCTCGAACGCTCGAG 1000
|||||||||||||| |||||||||||||||||||| |||| |||||||| ||||| ||||
Sbjct 776 GAGAAGATCTCATCATCTATTTCGAATTCTGCAAAAGTTTTGGTGTCTCAAACGCACGAG 835
Query 1001 AAATCCCTCAATTCGTTAGGATACCGGAGGAGGAAGTTGAAGCAATCGAGAAAATGATCG 1060
|||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 836 AAATTCCTCAATTTGTTAGGATACCCGAGGAGGAAGTAGAAGCAATCGAGAAAATGATCA 895
Query 1061 ATACCGTCCAAGAGAAGCCGAAGCTAGAGAAGGACGAAGAA-AA--AGAGGATGAGAAAG 1117
||| |||||||||||||||| ||| || ||| || |||||| || ||||||||||||||
Sbjct 896 ATAGCGTCCAAGAGAAGCCGGAGCCAGGGAAAGAAGAAGAAGAAGTAGAGGATGAGAAAG 955
Query 1118 CTATGGTGGTGTTGGAGCAGCCGAAGAAGCTGCAGACGATCATCACGGACAAATGGGAGA 1177
|||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 956 CTATTGTGGTGTTGGAGCAACCGAAGAAGCTGCAGACGATCATCACAGACAAATGGGAGA 1015
Query 1178 TTTTCGAAGACGATTATCGGTGTTTCGATAGAAAAGACAAATGGGAGATTTTCGAAGACG 1237
||||||||||||| ||||| ||||| | || | || | | ||| ||| ||
Sbjct 1016 TTTTCGAAGACGACTATCGTTGTTT-G---GACA-GA-A---G--AGA----CGA---CG 1057
Query 1238 AATATCATCAAAATCATCTGCCTCTTATAACAATGAACCAACCAGTTTACATCACTTATA 1297
||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 1058 AATATCATCAAAATCATCTGCCTCTTATAGTAACGAACCAACCAGTTTACATCACTTACA 1117
Query 1298 CAATGCCAGATTTGATTACATTCTAGTGGTCGTTACAACAATCTGG 1343
||||||||||||||||||| |||||||| | ||||||||||||||
Sbjct 1118 CAATGCCAGATTTGATTACCTTCTAGTGA-CATTACAACAATCTGG 1162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53592974715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5