BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G68110.1 Length=1433 Score E Sequences producing significant alignments: (Bits) Value Ahg926073 jgi|Araly1|926073|scaffold_201634.1 1677 0.0 > Ahg926073 jgi|Araly1|926073|scaffold_201634.1 Length=1163 Score = 1677 bits (908), Expect = 0.0 Identities = 1098/1186 (93%), Gaps = 28/1186 (2%) Strand=Plus/Plus Query 162 TAGGAGGGAGGCGGCTCGGACGATGAAGCTGTGGAAACGAGCTGCCGCCGCAATCAAAGA 221 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TAGGAGGGAGGCGGCT-TGACGATGAAGCTGTGGAAACGAGCTGCCGCCGCAATCAAAGA 59 Query 222 CCGGAAAAGCTTACTAGCCGTTGGTTTCTCACGGCGAAACAGCTCTTACCGGAACGCAGA 281 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 60 CCGGAAAAGCTTACTTGCCGTTGGTTTCTCACGGCGAAACAGCTCTTACCGGAACGCGGA 119 Query 282 TCTCGAAGCAGCTATCATCAAAGCCACCTCCCACGACGATTCCTCCGTCGACTATTCCAA 341 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 120 TCTCGAAGCAGCTATCATCAAAGCCACCTCCCACGACGATTCCTCCGTCGACTATTCAAA 179 Query 342 CGCTCACCGTGTCTACAAATGGATCCGTTCTTCTCCTCTTAATCTCAAGACTCTCGTCTA 401 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CGCTCACCGTGTCTACAAATGGATCCGTTCTTCTCCTCTTAATCTCAAGACTCTCGTCTT 239 Query 402 CGCAATCTCTTCTCGCGTTAACCACACGCGTAGCTGGATCGTTGCTCTTAAATCCTTAAT 461 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 240 CGCAATCTCTTCTCGCGTTAACCACACGCGTAGCTGGATCGTTGCGCTTAAATCCTTAAT 299 Query 462 GCTTCTTCATGGTGTTCTCTGTTGTAAAGTACCTTCCGTTGTCGGAGAGTTTCGTCGTCT 521 ||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||| Sbjct 300 GCTTCTTCATGGTGTTCTCTGTTGTAAAGTACCGTCCGTCGTTGGAGAAATTCGTCGTCT 359 Query 522 TCCTTTCGATCTTTCAGATTTCTCCGATGGTCATTCTTGTCTTAGCAAGACTTGGGGATT 581 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TCCTTTCGATCTTTCCGATTTCTCCGATGGTCATTCTTGTCTTAGCAAGACTTGGGGATT 419 Query 582 CAACGTCTTTGTTCGAACTTACTTCGCTTTTCTTCATCATTACTCTTCCTTCTTGTCCGA 641 |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 420 CAACATCTTTGTTCGAACTTACTTTGCTTTTCTTCATCATTACTCTTCCTTCTTGTCCGA 479 Query 642 TCAGATTCATCGTCTCCGTGGTAACAACAGAAGATCGTTGGAGAAGACATCTGATTCTGT 701 ||||||||| || ||||| |||||||||||||||||||||||| | | |||||||||||| Sbjct 480 TCAGATTCACCGCCTCCGCGGTAACAACAGAAGATCGTTGGAG-A-A-ATCTGATTCTGT 536 Query 702 TATCCAAGAGCTTGAACGGATTCAGAAACTCCAGTCTCTCCTAGATATGATTCTTCAGAT 761 ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| Sbjct 537 GATCCAAGAGCTTGAACGGATTCAAAAACTCCAGTCGCTCTTAGATATGATTCTTCAGAT 596 Query 762 TCGACCTGTTGCTGACAACATGAAGAAGACTTTGATCTTAGAAGCTATGGATTGTCTCGT 821 ||| ||| | || ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 597 TCGGCCTATAGCCGACAATATGAAGAAGACTTTGATCTTAGAAGCTATGGATTGTCTCGT 656 Query 822 CATCGAAAGTATCAACATCTACGGTAGAATTTGCGGCGCGGTTATGAAAGTCCTTCCGTT 881 |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 657 CATCGAAAGTATCAACATCTACGGTAGAATTTGCGGCGCGATTATGAAAATCCTTCCGTT 716 Query 882 GGCTGG-AAAATCAGAGGCTGCAACGGTTTTGAAAATCGTCAACAAGACCACATCTCAGG 940 |||||| |||| ||||||||||||||||||||||||||||| ||||| | |||||||||| Sbjct 717 GGCTGGGAAAA-CAGAGGCTGCAACGGTTTTGAAAATCGTCCACAAGGCGACATCTCAGG 775 Query 941 GAGAAGATCTCATCGTCTATTTCGAATTCTGCAAAGGTTTCGGTGTCTCGAACGCTCGAG 1000 |||||||||||||| |||||||||||||||||||| |||| |||||||| ||||| |||| Sbjct 776 GAGAAGATCTCATCATCTATTTCGAATTCTGCAAAAGTTTTGGTGTCTCAAACGCACGAG 835 Query 1001 AAATCCCTCAATTCGTTAGGATACCGGAGGAGGAAGTTGAAGCAATCGAGAAAATGATCG 1060 |||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 836 AAATTCCTCAATTTGTTAGGATACCCGAGGAGGAAGTAGAAGCAATCGAGAAAATGATCA 895 Query 1061 ATACCGTCCAAGAGAAGCCGAAGCTAGAGAAGGACGAAGAA-AA--AGAGGATGAGAAAG 1117 ||| |||||||||||||||| ||| || ||| || |||||| || |||||||||||||| Sbjct 896 ATAGCGTCCAAGAGAAGCCGGAGCCAGGGAAAGAAGAAGAAGAAGTAGAGGATGAGAAAG 955 Query 1118 CTATGGTGGTGTTGGAGCAGCCGAAGAAGCTGCAGACGATCATCACGGACAAATGGGAGA 1177 |||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 956 CTATTGTGGTGTTGGAGCAACCGAAGAAGCTGCAGACGATCATCACAGACAAATGGGAGA 1015 Query 1178 TTTTCGAAGACGATTATCGGTGTTTCGATAGAAAAGACAAATGGGAGATTTTCGAAGACG 1237 ||||||||||||| ||||| ||||| | || | || | | ||| ||| || Sbjct 1016 TTTTCGAAGACGACTATCGTTGTTT-G---GACA-GA-A---G--AGA----CGA---CG 1057 Query 1238 AATATCATCAAAATCATCTGCCTCTTATAACAATGAACCAACCAGTTTACATCACTTATA 1297 ||||||||||||||||||||||||||||| || |||||||||||||||||||||||| | Sbjct 1058 AATATCATCAAAATCATCTGCCTCTTATAGTAACGAACCAACCAGTTTACATCACTTACA 1117 Query 1298 CAATGCCAGATTTGATTACATTCTAGTGGTCGTTACAACAATCTGG 1343 ||||||||||||||||||| |||||||| | |||||||||||||| Sbjct 1118 CAATGCCAGATTTGATTACCTTCTAGTGA-CATTACAACAATCTGG 1162 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53592974715 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5