BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68120.1
Length=949
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475908 jgi|Araly1|475908|fgenesh2_kg.2__1038__AT1G68120.1 1208 0.0
> Ahg475908 jgi|Araly1|475908|fgenesh2_kg.2__1038__AT1G68120.1
Length=901
Score = 1208 bits (654), Expect = 0.0
Identities = 836/920 (91%), Gaps = 27/920 (3%)
Strand=Plus/Plus
Query 8 aaaaaacacacaaaaaGATCGAATTCACCATCCTCGTGTAGTTTGATTATGATGGAAGAA 67
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 AAAAAAAACACAAAAAGATCGAATTCACCATCCTCGTGTAGTTTGATTATGATGGATGAA 60
Query 68 GATGGATTGAATAATCGAAATTGGGGTTATTACGAGCCGTCACAATTCAGACCAAATCTA 127
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 61 GATGGATTGAGTAATCGAAATTGGGGTTATTACGAGCCGTCACAATTCAGGCCAAATTTA 120
Query 128 GGGTTTCAACTAATTCCAAGTATCTTAGACCGAAACGAGAAGCCATTTCTCTCCCCTCAT 187
|||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 121 GGGTTTCAACTAATTCCAAGTATCATAAACAGAAACGAGAAGCCATTTCTCTCCCCTCAG 180
Query 188 AGTCAGAATCT--A-AACTTCATAACACCTTCCAATGTCTATGGTGGCGGTAGCAGCAGT 244
| ||||| ||| | |||||| |||| ||||||||||||||| | |||| |||||||||
Sbjct 181 AATCAGAGTCTAAACAACTTCTTAACCCCTTCCAATGTCTATCGAGGCGATAGCAGCAGC 240
Query 245 GTTGTGTCGTATCCGCGT-GATTACACTGTCTCTGATGCACCATTCATGAGTTATAGTTG 303
||| |||||||||||| | ||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 241 GTTATGTCGTATCCGC-TGGATTATACTCTCTCTGATGCACCTTTCATGAGTTATAGTTG 299
Query 304 GTTAAACCAGCACAAAGATAGCAAGTTCTTCAGCAATGTTCCT--GAA-GTTTCTAGGAT 360
||| |||||||| | |||||||||||||||||||||||| ||| ||| | |||||||||
Sbjct 300 GTTGAACCAGCATAGAGATAGCAAGTTCTTCAGCAATGTACCTACGAATGCTTCTAGGAT 359
Query 361 GACTCAGT-CGATGCAGCTTTTGCAGCCCGAGGTGGTGACTGAGGTTGATGAGTCTGTCA 419
|||||| | ||||||||| | | ||||| ||| |||||| ||||||||| | |
Sbjct 360 GACTCA-TCCGATGCAGC-----C-G---GAGGTTGTGGGTGAGGTCGATGAGTCTCTTA 409
Query 420 AGAGAAGGCATTGTAGTGGTGGGCAGAGAGGTGGTGTTCCTAAGGTGAAGAAAGAGAAGA 479
||||||||||||||||||||||||| ||| |||| || ||||||||||||||||||||
Sbjct 410 AGAGAAGGCATTGTAGTGGTGGGCACAGA---GGTGCTCTTAAGGTGAAGAAAGAGAAGA 466
Query 480 AGCTCAAGGATAACAATATGCCAAGAGTACAAAGAGAGAGAAGTCCTTTGTTGAGGAAGT 539
|||| ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 467 AGCTGAAGGATAACAATATGCCAAGAGTGCAAAGAGCGAGAAGTCCGTTGTTGAGGAAGA 526
Query 540 GTATAGAGATGGTGATAAATGGTGTTTCTATGGATATTGGAGGTTTACCAGTTCCGGTTT 599
|| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 527 GTGTAGAGATGGTGATTAATGGGGTTTCTATGGATATTGGAGGTTTACCAGTTCCGGTTT 586
Query 600 GCTCGTGTACCGGAATGCCTCAACAGTGTTACCGATGGGGTTGCGGGGGATGGCAGTCTG 659
|||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 587 GCTCTTGTACCGGGATGCCTCAACAGTGTTACAGATGGGGTTGCGGGGGATGGCAGTCTG 646
Query 660 CTTGTTGTACCACTAATGTTTCGATGTACCCTTTACCGGTTAATACTAAAAGGCGTGGTG 719
| ||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||
Sbjct 647 CGTGTTGTACCACTAATGTTTCGGTGTACCCTTTGCCGATTAGTACTAAAAGGCGTGGTG 706
Query 720 CGAGGATTGCTGGAAGGAAAATGAGCCAAGGTGCTTTTAGGAAGGTTCTTGAGAAACTCT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 CGAGGATTGCTGGAAGGAAAATGAGCCAAGGTGCTTTTAGGAAGGTTCTTGAGAAACTCT 766
Query 780 CTTCTGATGGTTTTGATTTCTCAAACCCTATTGATTTGAAGTCTCATTGGGCTAAACATG 839
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 767 CTTCTGATGGTTTCGATTTCTCCAACCCTATCGATTTGAAGTCTCATTGGGCTAAACATG 826
Query 840 GAACCAATAAGTTCGTCACCATCAGATAAATAAAAAAGTCTGAGCCTCTCTTTTGTCGAA 899
||||||||||||| |||||||||||||||| || ||| || ||||||||||||||||
Sbjct 827 GAACCAATAAGTTTGTCACCATCAGATAAA-AAC---GTC-GAACCTCTCTTTTGTCGAA 881
Query 900 AATCCCtttttgttgttgtt 919
||||||||||||||||||||
Sbjct 882 AATCCCTTTTTGTTGTTGTT 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35225575308
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5