BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68130.1
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475906 jgi|Araly1|475906|fgenesh2_kg.2__1036__AT1G68130.1 2538 0.0
Ahg484116 jgi|Araly1|484116|fgenesh2_kg.5__108__AT2G01940.1 387 2e-106
> Ahg475906 jgi|Araly1|475906|fgenesh2_kg.2__1036__AT1G68130.1
Length=1709
Score = 2538 bits (1374), Expect = 0.0
Identities = 1611/1719 (94%), Gaps = 41/1719 (2%)
Strand=Plus/Plus
Query 1 CTTTGTTTCTCTCTCTTAACTCATCTTATACTTTCTTCTTCTATTAGTAAAGATGAGTAC 60
|||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct 1 CTTTGTTTCTCTCTCTTAACCCATC-T-TACTTTCTTCTTCTATTAGTAAAGATGAGTAC 58
Query 61 TCTCTCTACCAAATAAATAAGGAAACATAAAAAACAATCTCTCCTTCTTTCTCTACATGA 120
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TCT-T-TACCAAATAAATAAGGAAACATAAAAAACAATCTCTCCTTCTTTCTCTACATGA 116
Query 121 AAAACAAAAGATTCCTCAATTTTGTTCTTATTTTTCATTTAGTCACAGTACCTCTCTCAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AAAACAAAAGATTCCTCAATTTTGTTCTTATTTTTCATTTAGTCACAGTACCTCTCTCAC 176
Query 181 TATAAACCACACTGTCTTGAGATAA-AATACAAAAAGAGAAGAGATTAAAAACCTCATCC 239
||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct 177 TATAAACCACACTGTCTTGAGATAACAA-ACAAAAAGTGA-GA--TTAAAAACCTCATCC 232
Query 240 GATGATAGACTACGAGAGAAGCAATACCACCAAGAACATCAACACCCATCATCACAACCC 299
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 233 GATGATAGACTACGAGAGAAGCAATAACACCAAGAACATCAACAACCATCATCGCAACCC 292
Query 300 TCCTCCATCTTCATCTTCCTCTGATCTTCTTCCCGACGGTAATGGAACCGCCGTGACTCA 359
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 293 TCCTCCATCTTCATCTTCCTCCGATCTTCTTCCCGACGGTAATGGAGCCGCCGTGACACA 352
Query 360 GAAGCGGAAACGGAGACCCGCCGGGACACCGGATCCGGAGGCGGAGGTGGTATCTTTATC 419
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 353 GAAGCGCAAACGGAGACCCGCCGGGACACCGGATCCGGAGGCGGAGGTAGTATCTTTATC 412
Query 420 ACCAAGAACGTTACTAGAATCGGATCGGTACGTATGTGAGATCTGTAACCAAGGGTTTCA 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TCCAAGAACGTTACTAGAATCGGATCGGTACGTATGTGAGATCTGTAACCAAGGGTTTCA 472
Query 480 AAGGGACCAGAATCTACAGATGCATAGAAGACGACATAAAGTTCCATGGAAGCTTCTTAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 473 AAGGGACCAGAATCTACAGATGCATAGAAGACGACATAAAGTTCCATGGAAGCTTCTAAA 532
Query 540 AAGAGAGACCAACGAGGAAGTGAGGAAA-AGAGTCTACGTCTGTCCGGAGCCGACATGTC 598
||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct 533 AAGAGAGACCAACGAGGAAGTAAG-AAAGAGAGTCTACGTCTGTCCGGAGCCGACATGTC 591
Query 599 TCCACCACAACCCTTGCCACGCGCTCGGAGATCTCGTGGGAATCAAGAAACACTTCCGAC 658
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 592 TTCACCACAACCCTTGTCACGCGCTCGGAGATCTCGTGGGAATCAAGAAACACTTTCGAC 651
Query 659 GGAAACATAGTAACCACAAGCAATGGATCTGCGAGCGATGCTCAAAAGGCTACGCAGTTC 718
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 652 GGAAACATAGTAACCATAAGCAATGGATCTGCGAGCGATGCTCAAAAGGCTACGCCGTTC 711
Query 719 AATCTGATTACAAAGCTCATCTCAAAACCTGTGGCACTCGCGGCCACTCCTGTGACTGCG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AATCTGATTACAAAGCTCATCTCAAAACCTGTGGCACTCGCGGCCACTCCTGTGACTGCG 771
Query 779 GCCGAGTTTTTTCCAGAGTGGAAAGTTTCATAGAGCACCAAGACACTTGCACCGTACGCC 838
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
Sbjct 772 GCCGAGTTTTTTCCAGAGTGGAGAGTTTCATAGAGCACCAAGACAATTGCACCGTACGAC 831
Query 839 GATCCCAACCCTCCAACCACCGTTTACATGAGCAGCAACAACATACCACAAACGCTACAC 898
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 832 GATCCCAACCCTCCAACCACCGTTTACATGAGCAGCAACAACATACTACAAACGCTACAC 891
Query 899 AAACCGCTTCAACCGCGGAAAACAACGAGAACGGGGACCTCTCCATTGGTCCTATATTGC 958
|||||||||||| ||| ||||||||||| |||| ||||||||| ||||||||| ||||||
Sbjct 892 AAACCGCTTCAATCGCCGAAAACAACGAAAACGCGGACCTCTCTATTGGTCCTGTATTGC 951
Query 959 CTGGACATCCTTTACAAAGAAGACAATCCCCACCGTCGGAACAACAACCATCCACTTTGC 1018
||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||
Sbjct 952 CTGGACATCCTTTACAAAGAAGACAATCCCCACCGTCCGATCAACAACCATCCGCTTTGC 1011
Query 1019 TCTATCCCTTCGTT------------ACTAATGGTAGTATCGAGCTTCAGCTACTTCCAT 1066
||||||| || ||| |||||||| || ||||||||||||||||||||||
Sbjct 1012 TCTATCCTTTTGTTGCCTCGTGCGCGACTAATGGAAGCATCGAGCTTCAGCTACTTCCAT 1071
Query 1067 CGAGGAATTGTGCTGATGAGACCAGCCTTAGTCTGTCTATAGGGACAATGGATCAAAAGA 1126
||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1072 CGAGGCATAGTGCTGATGAGACCAGCCTTAGTCTGTCTATAGGGACAATGGATCAAACTA 1131
Query 1127 CAATGTCGGAAGTTgagaagaagagctacgagaagggagaaacgagcctagaaagagagg 1186
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1132 CAATGTCGGAAGTTGAGAGGAAGAGCTACGAGAAGGGAGAGACGAGCCTAGAAAGAGAGG 1191
Query 1187 aggcgagaagagaaacaaagaggcagaTCGAAATCGCGGAATTGGAGTTTGCTGAAGCCA 1246
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1192 AGGCGAGAAGAGAAACGAAGAGGCAGATCGAAATTGCGGAATTGGAGTTTGCTGAAGCCA 1251
Query 1247 AGAGAATAAGGCAACATGCGAGAGCTGAGCTTCACAAAGCTCATCTTTTTAGAGAAGAAG 1306
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1252 AGAGAATAAGGCAACATGCGAGAGCCGAGCTTCACAAAGCTCAGCTTTTTAGAGAAGAAG 1311
Query 1307 CAAGTAGGAGGATTAGTGCAACGATGATGCAAATAACTTGCCACAATTGCAAGCAACATT 1366
||||| | |||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1312 CAAGTCGAAGGATTAGTGCAACGATGATGCAAATCACTTGCCACAACTGCAAGCAACATT 1371
Query 1367 TTCAAGCTCCGGCTGCTTTGGTTCCTCCTCCTCCTCAGAC-GCATTGTACCGATGAGAGC 1425
|||||||||| |||||||||||||| |||||||||||| | ||||||||| |||||||||
Sbjct 1372 TTCAAGCTCCTGCTGCTTTGGTTCCACCTCCTCCTCAG-CTGCATTGTACTGATGAGAGC 1430
Query 1426 ACGTCTCTGGCCGTGAGCTACATGTCTTCGGCGACTACCGAAGGAGAAAAGGCGAGTGAT 1485
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1431 ACGTCTCTCGCCGTGAGCTACATGTCGTCGGCTACTACCGAAGGAGAAAAGGCGAGTGAT 1490
Query 1486 AGAGCATC-T--T---C--ATAGACCTTGAAGAGAGAACACAAAAGAAAACAAA-TATTC 1536
|||||||| | | | ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1491 AGAGCATCGTCATAGTCTCATAGACCTTGAAGAGAGAACACAAAAGAAAAAAAAATATTC 1550
Query 1537 TTCttttttttCTTTGATTGGAATTAAAGATCATCTTTTGATATTCGTTGGTTTTCTTAC 1596
||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| |||
Sbjct 1551 TTCTTCTTTTTCTTTGATTGGAATTGAAGATCATCTTTTGAGATTCGTTGGTTTTTTTAT 1610
Query 1597 A-TA--TTCTTGGTTTGTGGGTTACCAGGTTTGGGTATTCACTGGGGGTTTGAttttttt 1653
| || |||||||||||||||| |||||| |||| ||||||| |||||||||||||||||
Sbjct 1611 AATACATTCTTGGTTTGTGGGTAACCAGGGTTGGATATTCACGGGGGGTTTGATTTTTTT 1670
Query 1654 tCT----CTCAAACAAAAACCAAAGAAGAGAATAGTTTT 1688
| | ||||||||||||||||||||||||| ||||||
Sbjct 1671 TTTGTTTCTCAAACAAAAACCAAAGAAGAGAAGAGTTTT 1709
> Ahg484116 jgi|Araly1|484116|fgenesh2_kg.5__108__AT2G01940.1
Length=1849
Score = 387 bits (209), Expect = 2e-106
Identities = 384/470 (82%), Gaps = 6/470 (1%)
Strand=Plus/Plus
Query 355 ACTCAGAAGCGGAAACGGAGACCCGCCGGGACACCGGATCCGGAGGCGGAGGTGGTATCT 414
||||||||| ||||| | ||||| || || ||||| ||||| || || || || || |||
Sbjct 480 ACTCAGAAGAGGAAAAGAAGACCTGCAGGTACACCAGATCCAGATGCAGAAGTTGTGTCT 539
Query 415 TTATCACCAAGAACGT-TACTAGAATCGGATC-GGTACGTATGTGAGATCTGTAACCAAG 472
|||||||||||||| | | || ||||| || | | ||| ||||||| |||||||||||||
Sbjct 540 TTATCACCAAGAAC-TCTTCTTGAATCAGA-CAGATACATATGTGAAATCTGTAACCAAG 597
Query 473 GGTTTCAAAGGGACCAGAATCTACAGATGCATAGAAGACGACATAAAGTTCCATGGAAGC 532
|||||||||| ||||| ||||| ||||||||| ||||||| || ||||||||||||||||
Sbjct 598 GGTTTCAAAGAGACCAAAATCTCCAGATGCATCGAAGACGTCACAAAGTTCCATGGAAGC 657
Query 533 TTCTTAAAAGAGAGACCAACGA-GGAAGTGAGGAAAAGAGTCTACGTCTGTCCGGAGCCG 591
||||||||||||| | |||| | || |||| |||| ||||||| || || || || ||
Sbjct 658 TTCTTAAAAGAGACAACAAC-ATAGAGGTGAAGAAACGAGTCTATGTTTGCCCTGAACCC 716
Query 592 ACATGTCTCCACCACAACCCTTGCCACGCGCTCGGAGATCTCGTGGGAATCAAGAAACAC 651
|| ||||| ||||| | ||||| || || ||||||||||| || || ||||| |||||
Sbjct 717 ACTTGTCTTCACCATGATCCTTGTCATGCTCTCGGAGATCTTGTCGGTATCAAAAAACAT 776
Query 652 TTCCGACGGAAACATAGTAACCACAAGCAATGGATCTGCGAGCGATGCTCAAAAGGCTAC 711
||| || | |||||||||||||| ||||||||| | || ||| ||||||| ||||| ||
Sbjct 777 TTCAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAGAGATGCTCTAAAGGTTAT 836
Query 712 GCAGTTCAATCTGATTACAAAGCTCATCTCAAAACCTGTGGCACTCGCGGCCACTCCTGT 771
|| |||||||||||||||||||||||||||||||| ||||| ||| | || || || |||
Sbjct 837 GCTGTTCAATCTGATTACAAAGCTCATCTCAAAACTTGTGGTACTAGAGGACATTCTTGT 896
Query 772 GACTGCGGCCGAGTTTTTTCCAGAGTGGAAAGTTTCATAGAGCACCAAGA 821
||||| || || || || ||||| ||||| ||||| || || || |||||
Sbjct 897 GACTGTGGTCGTGTCTTCTCCAGGGTGGAGAGTTTTATTGAACATCAAGA 946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66391297035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5