BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68140.1
Length=1678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475905 jgi|Araly1|475905|fgenesh2_kg.2__1035__AT1G68140.1 1908 0.0
> Ahg475905 jgi|Araly1|475905|fgenesh2_kg.2__1035__AT1G68140.1
Length=1329
Score = 1908 bits (1033), Expect = 0.0
Identities = 1267/1371 (92%), Gaps = 52/1371 (4%)
Strand=Plus/Plus
Query 1 GGACGCGTGGACGTTTTACTTGACGTGAAGGAAAGAGAAACTCCGATACCAGAGC-T--T 57
||||||||||| ||||||| ||||||||| ||||||||||||||||| ||||||| | |
Sbjct 1 GGACGCGTGGAGGTTTTACGTGACGTGAA-GAAAGAGAAACTCCGATTCCAGAGCTTGGT 59
Query 58 GGTGGAGCAGTGGAGACGCTTCCACGCGAATCTCGCAGTCCCActcgtcttcctccttcc 117
||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 60 GGTGGAGCAGTGGAGACGCTTCCACGCGAATCTCGCAGTCCCACTCG------T-C-T-- 109
Query 118 ctctcttcctttgaataccttacctctctcggtctcgctccctccctcGATTCAAGCCTA 177
|| | | | |||||||||||||||||||||| ||| ||||||||||||||
Sbjct 110 -TC-C-T-C------TACCTTACCTCTCTCGGTCTCG----CTCACTCGATTCAAGCCTC 155
Query 178 TTCGTCTTCTTACGCTGTG-TCTT-GAAACCCTAATCTTTTTCATTTCAATCCCTAAAGG 235
||||||||||||||||||| | || ||||||||| || ||||||||||||||||
Sbjct 156 TTCGTCTTCTTACGCTGTGAT-TTCCAAACCCTAA-----TT--TTTCAATCCCTAAAGG 207
Query 236 TGTGATTTTGAGATTATGGCCAAAGCTAGGAAGGCAGGACGTAGGGTTCCTTCACGACGC 295
|||||| |||||||||||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct 208 TGTGATCTTGAGATTATGGCCAAAGCTAGGAGGGCAGGACGCAGGGTTCCTTCGCGACGC 267
Query 296 TTCAGGGCAAGAGCAAAACCATACAAATTTCCATCTTCTAAAAGACTTGTGGCGAGAAAC 355
|||||||||||||||||||| |||||||||||||||||||| | |||||||| || ||
Sbjct 268 TTCAGGGCAAGAGCAAAACCGTACAAATTTCCATCTTCTAACCGTCTTGTGGCAAGGAAT 327
Query 356 ATGTTTGCGGAAGATTGTTCAAAGTGTCTAGAGAAGAGGGATTGGGAGAATGTTATATGT 415
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 328 ATGTTTGCAGAAGATTGTTCAAAGTGTCTAGAGAAGAGGGACTGGGAGAATGTTATATGT 387
Query 416 TCGGTTTGCATGGAGTGTCCACACAACGCTGTCCTTCTTCTCTGCTCATCTCATGACAAG 475
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 388 TCGGTTTGCATGGAGTGTCCACACAATGCTGTTCTTCTCCTCTGCTCATCTCATGACAAG 447
Query 476 GGATGTCGTCCTTACATGTGTGGAACCAGTTTCCGGTATTCTAATTGCTTAGATCAGTAC 535
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 448 GGATGTCGTCCTTACATGTGTGGAACCAGTTTCCGGTATTCCAATTGCTTAGATCAGTAC 507
Query 536 AAGAAAGCGTCAGCTAAGCTGAAGACATCGGGCCATCAACAGATCAATAAGTCTGAGCTT 595
|||||||| ||||||||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct 508 AAGAAAGCATCAGCTAAGCTAAAGTCATCAAGCCATCAACAGATCAATAAGTCTGAGCTT 567
Query 596 GGAAATCTCACATGCCCACTTTGTAGAGGACAGGTGAAAGGTTGGACAATCGTACAGCCT 655
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 568 GGAAATCTCACATGCCCACTTTGTAGAGGCCAGGTGAAAGGTTGGACAATCGTACAGCCT 627
Query 656 GCTCGTGACTTTTTGAATCTTAAGAAGAGGATCTGTATGCAGGAGAACTGTGTTTATGCT 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 628 GCTCGTGACTTTTTGAATCTTAAGAAGAGGATCTGTATGCAGGAGAACTGTGTTTTTGCT 687
Query 716 GGAACCTTCAAAGAGCTGAGGAAACACATGAAAGTGGACCACCCTAGTGCGAAGCCGCGT 775
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 688 GGAACCTTCAAAGAGCTGAGGAAACACATGAAAATGGACCACCCTAGTGCGAAGCCGCGT 747
Query 776 GAAGTGGATCCTGATGTGGAGCAGAATTGGAGAAGGCTTGAGATCGAGCATGACCGGGAC 835
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 748 GAAGTGGATCCTGATGTGGAGCAGAATTGGAGAAGGCTTGAGATTGAGCATGACCGGGAT 807
Query 836 GATGTTATGAGCACGATTAGGTCGACAATGCCTGGTACAGTGGTGTATGGTGATTACGTA 895
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 808 GATGTTATGAGCACGATTAGGTCGACAATGCCTGGAACAGTGGTGTTTGGTGATTACGTA 867
Query 896 ATTGAAAGGAACAATGCCAACGGTTCAGATTCAGACGAGGGTGGTGATGATGATGGGATC 955
|||||||||| |||||||||||||||||||| |||||| | |||||||||| || ||||
Sbjct 868 ATTGAAAGGACCAATGCCAACGGTTCAGATTTAGACGA--G-GGTGATGATGGTGCGATC 924
Query 956 GATGCTGCATTTGGTAGGAATCTTGTGAATGTTTTCCTTCTGTTACATGCTTTTGGGGCA 1015
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 GATGCTGCACTTGGTAGGAATCTTGTGAATGTTTTCCTTCTGTTACATGCTTTTGGGGCA 984
Query 1016 TCAG-GTAATCAGATC-AGACGCTCTGATTCAGATTCGAATGACTCGACAACAATCAACC 1073
|||| | ||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 985 TCAGAG-AATCAGA-CAAGGCGCTCTGATTCAGATTCGAATGACTCGACAACAATCAACC 1042
Query 1074 GAGGAACAAGTGAGCTGAATTTCTCTgaagaagaagaggaagaggaggaggaggagaggC 1133
| |||||||||||||||||||||||||||||||| || |||||||| | || ||||||||
Sbjct 1043 GCGGAACAAGTGAGCTGAATTTCTCTGAAGAAGAGGATGAAGAGGA-G-GG-GGAGAGGC 1099
Query 1134 ATAGTAACAGTAACTCTTTGGCAAGTCGAATGAGGCGACAAGGACGCGTTCTGCTGGGAC 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 ATAGTAACAGTAACTCTTTGGCAAGTCGAATGAGGCGACAAGGACGCGTTCTGCTGGGAC 1159
Query 1194 GTTCAGGTAGGAGACGTAGAGATAGAGAAGCTAACCAGAACACAGGTCCTCCTCCTAGAT 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 GTTCAGGTAGGAGACGTAGAGATAGAGAAGCTAACCAGAACACAGGTCCTCCTCCTAGAT 1219
Query 1254 GAGAGAGAATCACACGAATTCAAAAGAAAACCCTGT--CTGATTTTGGGTTTCAGGTAAG 1311
|||||||| |||| ||||||||||| |||||||| | |||||| |||||||||||||||
Sbjct 1220 GAGAGAGA-TCACGCGAATTCAAAACAAAACCCTTTATCTGATTCTGGGTTTCAGGTAAG 1278
Query 1312 CTTTATGGTATGGTTAGGTACAAA-TGTAGTTTCGACAAGTTTaaaacaaa 1361
|||||| |||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 1279 TTTTATGATATGGTTAGGTACAAAATGTAGCTTCTACAAGTTTAAAACAAA 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62925084740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5