BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68150.1
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908362 jgi|Araly1|908362|Al_scaffold_0002_1443 1742 0.0
> Ahg908362 jgi|Araly1|908362|Al_scaffold_0002_1443
Length=1083
Score = 1742 bits (943), Expect = 0.0
Identities = 1038/1083 (96%), Gaps = 9/1083 (1%)
Strand=Plus/Plus
Query 48 AAAGAATAGAGGTTCGATTTGCATCTCCATTAATGGGCATCGATCTTTCTCTTAAGCTCG 107
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 AAA-AATAGAAGTTCGATTTGCATCTCCATTAATGGGCATCGATCTTTCTCTTAAGCTCG 64
Query 108 AGGCCGAGGAGAAAAAGAAAGAGATAGAAGGATCGAAACATAGCCGTGAGAACAAAGAAG 167
||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 65 AGGCCAAGGAGAAAAAGAAAGAGATAGAAGGATCAAAACATAGCCGTGAGAATAAAGAAG 124
Query 168 ACGAAGAACATGATGCTAGTGGTGATGAAGATGAACAAATGGTGAAAGAAGACGAAGATG 227
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 125 ACGAAGAACATGATGCTAGTGGTGATAAAGATGAACAAATGGTGAAAGAAGCCGAAGATG 184
Query 228 ATTCTTCTTCTTTAGGTTTAAGAACCCGAGAAGAAGAAAACGAACGTGAAGAGCTCTTGC 287
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 185 A---TTCTTGTTTAGGTTCAAGAACCCGAGAAGAAGAAAACGAACGTGAAGAGCTCTTGC 241
Query 288 AGCTACAGATCCAGATGGAAAGTGTGAAAGAAGAGAATACTAGGTTGAGGAAGCTTGTCG 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AGCTACAGATCCAGATGGAAAGTGTGAAAGAAGAGAATACTAGGTTGAGGAAGCTTGTCG 301
Query 348 AGCAGACTCTTGAAGATTATCGTCATCTTGAGATGAAATTCCCGGTTATCGATAAAACCA 407
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 302 AGCAGACTCTTGAAGATTATCGTCATCTGGAGATGAAATTCCCGGTTATCGATAAAACCA 361
Query 408 AGAAGATGGATCTTGAAATGTTCCTTGGAGTACAAGGCAAACGATGTGTGGATATAACAA 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 362 AGAAGATGGATCTTGAAATGTTCCTTGGAGTACAAGGCAAACGATGTGTGGATATAAAAA 421
Query 468 GTAAGGCTCGGAAAAGAGGAGCTGAGAGATCTCCGTCAATGGAAAGAGAAATAGGGCTTT 527
|||||| || ||||||||||| |||||||||||| || ||||||||||||||||||||||
Sbjct 422 GTAAGGTTCAGAAAAGAGGAGGTGAGAGATCTCCATCCATGGAAAGAGAAATAGGGCTTT 481
Query 528 CACTTTCTCTAGAGAAAAAACAGAAACAAGAAGAGAGCAAAGAAGCTGTTCAGTCTCATC 587
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CACTTTCTCTACAGAAAAAGCAGAAACAAGAAGAGAGCAAAGAAGCTGTTCAGTCTCATC 541
Query 588 A---CCAAAGATACAATAGTAGCAGCTTAGATATGAATATGCCACGTATCATTTCATCTT 644
| |||||||||||||| ||||||||| |||| || ||||||||||||||||||||
Sbjct 542 ATAACCAAAGATACAATATTAGCAGCTTCGATACAAACGCGCCACGTATCATTTCATCTT 601
Query 645 CTCAAGGTAATAGAAAGGCCAGGGTGTCCGTGAGGGCGAGATGTGAGACCGCAACAATGA 704
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 602 CTCAAGGGAATAGAAAGGCCAGGGTGTCTGTGAGGGCGAGATGTGAGACCGCAACAATGA 661
Query 705 ATGATGGATGCCAATGGAGGAAGTACGGTCAGAAAACCGCGAAAGGGAATCCATGTCCTC 764
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 662 ATGATGGATGCCAATGGAGGAAGTACGGTCAGAAAACCGCGAAAGGGAATCCATGTCCAC 721
Query 765 GAGCTTATTACCGATGCACCGTGGCTCCAGGATGTCCCGTTAGAAAACAGGTGCAAAGGT 824
|||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||
Sbjct 722 GAGCTTATTACCGATGCACCGTGGTTCTAGGATGTCCCGTTAGGAAACAGGTGCAAAGGT 781
Query 825 GTTTAGAAGACATGTCAATACTGATAACAACCTACGAAGGAACACATAACCATCCACTTC 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GTTTAGAAGACATGTCAATACTGATAACAACCTACGAAGGAACACATAACCATCCACTTC 841
Query 885 CGGTCGGAGCAACAGCCATGGCTTCCACTGCCTCTACTTCTCCATTCTTGTTACTCGATT 944
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 CGGTCGGAGCAACAGCCTTGGCTTCCACTGCCTCTACTTCTCCATTCTTGTTACTCGATT 901
Query 945 CCAGTGACAACCTCTCTCATCCTTCCTATTACCAAACTCCTCAAGCCATAGACTCTTCTT 1004
|||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 902 CCAGCGACAACCTCTCTCATCCTTCCTATTACCAAACTCCTCCAGTCATAGACTCTTCTT 961
Query 1005 TGATTACATACCCACAAAATAGCAGCTAC-AACAATCGAACCATAAGAAGCTTGAACTTT 1063
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 962 TGATTACATACCCACAAAATAGCAGC-ACCAATAATCGAACCATAAGAAGCTTGAACTTT 1020
Query 1064 GATGGTCCATCTAGAGGAGATCACGTTTCATCTTCTCAAAACCGATTAAATTGGATGATG 1123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1021 GATGGTCCATCTAGAGGAGATCATGTTTCATCTTCTCAAAACCGATTAAATTGGATGATG 1080
Query 1124 TAG 1126
|||
Sbjct 1081 TAG 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45861869151
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5