BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68160.1
Length=1451
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475902 jgi|Araly1|475902|fgenesh2_kg.2__1032__AT1G68160.1 1480 0.0
> Ahg475902 jgi|Araly1|475902|fgenesh2_kg.2__1032__AT1G68160.1
Length=1264
Score = 1480 bits (801), Expect = 0.0
Identities = 1033/1141 (91%), Gaps = 31/1141 (3%)
Strand=Plus/Plus
Query 134 CAAGCTTTATCCATGGCGTAAGATGATTCACCTTCTCAAAGTTTGATC-CTTTTTTCATA 192
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 4 CAAGCTTTATCCATGGCGTAAGATGATTCACCTTCTCAAAGTTTG-TCTCTTTTTTCATA 62
Query 193 TCTGATCA-AAGGAGAGTTTTGGGTTTGATTTCTAATTGTTAAAGTTT-TA-ATCTTT-- 247
|||||||| || ||| |||| ||||||||||||| ||||||||||||| | || |||
Sbjct 63 TCTGATCACAA-GAGGGTTTCGGGTTTGATTTCTGATTGTTAAAGTTTAAATATTTTTAG 121
Query 248 TT---ATTTGGGTTT-GTGTTCGATTATGTGGATGGCTACTCAATCAAATTCTGGGTTCG 303
|| |||||||||| | ||| ||||||||||||||||| |||||| |||||||||||||
Sbjct 122 TTGAAATTTGGGTTTAGGGTTTGATTATGTGGATGGCTAGTCAATCTAATTCTGGGTTCG 181
Query 304 A-TTCTTTGAGTTCTATGATGAGTCGTCACGCTATTAATTTCCAATCTAACACTTCTTCG 362
| || ||||| |||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 182 AGTT-TTTGAATTCTATGATGAGTCGTCACGCTATTAATTTCCAATCTAACACCTCCTCG 240
Query 363 GAGATGACTCCAATGAGTCCGTACTTGGGGATGAATATGAATATGATCAATGTTGGTTCT 422
||||||| | | ||||||||||||||||||||| | | |||||||||||||| ||||
Sbjct 241 GAGATGATTTCTATGAGTCCGTACTTGGGGATG---A-G--TATGATCAATGTTGCTTCT 294
Query 423 CCTGGTTTTCTTCAAACCGGGAATTCTTCGAATGGTTCCGATTCGGGTTCTGGTCTAAAG 482
|||||||| |||||||||||||||||||||||| ||| ||||||| |||||| || | |
Sbjct 295 CCTGGTTTAGTTCAAACCGGGAATTCTTCGAATGCTTCTGATTCGGTTTCTGGCCTCATG 354
Query 483 CTTGATACTTCCATGGTTAGTGAATGGTCAAATGAAGAACAATACATATTGGATGCTGGT 542
||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 355 CTTGATACTGCCATGGCTAGTGAATGGTCAAATGAAGAACAATACATATTGGATGATGGT 414
Query 543 CTTGAAAAATATAAGGATATGCCAAGTATTGATATGTATATTCAAATTGGAAACACTTTA 602
|||||||||||||||||||| |||||||| || | |||| ||||||||||||||| ||||
Sbjct 415 CTTGAAAAATATAAGGATATACCAAGTATCGAGAGGTATGTTCAAATTGGAAACAGTTTA 474
Query 603 CCTGATAAAAGTATTCGAGATATTGCTTTGCGGTGTAGGTGGCTGAGGAGAAAGAGAAGA 662
|||||||||||| ||||||| |||||||||||||||| |||| ||| ||||||||||||
Sbjct 475 CCTGATAAAAGTGTTCGAGACATTGCTTTGCGGTGTATGTGGATGACTAGAAAGAGAAGA 534
Query 663 AAATCAGAAGAATTAAACTGTGGAAGAAGAGCAAGTTCTAGCAAGGGCAAGCAGGTGGAA 722
||||||||||||||||| |||||||||||| | ||||||||||||| |||||||||||||
Sbjct 535 AAATCAGAAGAATTAAATTGTGGAAGAAGAACGAGTTCTAGCAAGGACAAGCAGGTGGAA 594
Query 723 TCGTCGTCTAAGTCAAGCATTCCCTCTGTTTTGCCTCATAACATGGCTTCATATCCTTTC 782
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 595 TCGTCTTCTAAGTCAAGCATTCCCTCTGTTTTGCCTCATAACATGGCTTCGTATCCTTTC 654
Query 783 TCAGGGCCATCTACAAGCACCAGTAAACAAATTACGTCTGAAGATTTAAGTAGCTATGCA 842
|||| ||| |||||||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 655 TCAGTGCCCTCTACAAGCACCAGTAAACAAATTACATCTGAAGATTTAAGTGGCCATGCA 714
Query 843 ACAAATCT-TATAGAACAGAATGTACGAGCTTTTAGTCAAATTAGAGCTAATCTCTCCTC 901
| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ATAAATCTCT-TAGAACAGAATGTACGAGCTTTTAGTCAAATTAGAGCTAATCTCTCCTC 773
Query 902 ATATAAGGCAGGGGATAACCTAGATCTCTTTCGTCAGGCAAGGAACAACCTTATCACCAT 961
|||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 774 ATATAAGGTAGAGGATAACGTAGATCTCTTTCGTCAGGCAAGGAACAACCTTATCACCAT 833
Query 962 CCAAAATGAGATAAATAATATGCCTGGATTGATGAACAAGATGCCACCATTGCCAGTCAC 1021
|||||||| || |||||||||||||| ||||||||| |||||||||||||||| |||||
Sbjct 834 TCAAAATGACATGAATAATATGCCTGGCTTGATGAACCAGATGCCACCATTGCCGGTCAC 893
Query 1022 AATCAATGATGATCTCTCGGTGATGATGCCATTCAATACGATGCAAAGTGGCGGCTTCCA 1081
||||||||||||||||||| ||||| |||||| | |||||||||||||||||||||||
Sbjct 894 AATCAATGATGATCTCTCGCTGATG---CCATTCCACACGATGCAAAGTGGCGGCTTCCA 950
Query 1082 TAGGAAGTAGAAGTCTTAGGAAATCATCTGGTTTCCCTTAGTTACCTGTAAATTATCCTA 1141
|| |||| ||||| ||| | || ||||||||||||||||| |||||||||||||||||||
Sbjct 951 TACGAAGCAGAAGCCTT-G-AA-TCATCTGGTTTCCCTTAATTACCTGTAAATTATCCTA 1007
Query 1142 AAGAAGCTGGAGGAGGTa-aaaaaaaGCTCATCAAATGTTGGGAAGTTTGTAGAAATGTG 1200
||||||||||||||| | ||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1008 AAGAAGCTGGAGGAGA-AGAAAAAAAGCTCATCACATGTTGTGAAGTTTGTAGAAATGTG 1066
Query 1201 ATTCTTTCGTAACACCAACGATCTTTATTGCTGCGCGGGA-TGTTGAAACAAGACATAAT 1259
|||||||| ||||||||| |||||||||||| | ||| | |||||||||| ||||||||
Sbjct 1067 ATTCTTTCATAACACCAAGGATCTTTATTGCCGGGCGCCAATGTTGAAACAGGACATAAT 1126
Query 1260 A 1260
|
Sbjct 1127 A 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54278599125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5