BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68170.1
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908384 jgi|Araly1|908384|Al_scaffold_0002_1465 1618 0.0
> Ahg908384 jgi|Araly1|908384|Al_scaffold_0002_1465
Length=1083
Score = 1618 bits (876), Expect = 0.0
Identities = 1012/1078 (94%), Gaps = 8/1078 (1%)
Strand=Plus/Plus
Query 1 GAAATGAAAGATATAACGGCAATGGTGGTGGTTCAAATAGCTACGGCAGGGTTAAACATA 60
||||||| |||||||||||||||||| |||||||| |||||| |||||||||||||||||
Sbjct 10 GAAATGAGAGATATAACGGCAATGGTAGTGGTTCAGATAGCTTCGGCAGGGTTAAACATA 69
Query 61 TTTTTCAAGCTAGCAATGGAAGATGGTATGAACCCAAGTGTACTCGTGGCCTATCGTCTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 TTTTTCAAGCTAGCAATGGAAGATGGTATGAACCCAAGTGTACTCGTGGCCTATCGTCTC 129
Query 121 TTGTTTGCTACACTTTTCATGATTCCTATATGCTTCATCTTTCAAAGGAAGAAGAGGCCA 180
||||||||||||||||||||| ||||| | | ||||||||||||||||||||||||||||
Sbjct 130 TTGTTTGCTACACTTTTCATGCTTCCTTTGTCCTTCATCTTTCAAAGGAAGAAGAGGCCA 189
Query 181 GAGTTTACATGCAGGCTGATGTTACTAGCATTACTCTCAGGGTTACTCGGTGTGGTGATA 240
|| |||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 190 GATTTTACATGGAGGCTCATGTTACTAGCATTAATCTCAGGATTACTCGGTGTGGTGATA 249
Query 241 CCAAGTATCCTAACCATTACGGGTCTAGCTCTAACGTCAGCAACATTCACCTCTGCTGCT 300
|| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct 250 CCGAGTATCCTAACCATTGCGGGTCTGGCTCTAACGTCAGCAACATTCACCTCTGCAGCT 309
Query 301 GGCGTTCTCACTCCATTGGTCACTTTCATCTTCGCTGCACTTCTTAGGATGGAGAGTGTA 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GGCGTTCTCACTCCATTGATCACTTTCATCTTCGCTGCACTTCTTAGGATGGAGAGTGTA 369
Query 361 CGGCTTGGATCGAGCGTAGGGCTGGCTAAGGTTTTTGGAACATTGTTTGGTGTTGGTGGA 420
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 370 CGGCTTGGATCGAGCGTAGGGTTGGCTAAGGTTTTTGGAACGTTGTTTGGTGTTGGTGGA 429
Query 421 GCTCTTGTCTTTATATTCTATAGAGGAATAGAGATCCGA-CTATGGTCAACTCACGTTAA 479
||||||||||||||||| ||||||||||||||||| | | |||||||||||||| ||| |
Sbjct 430 GCTCTTGTCTTTATATTTTATAGAGGAATAGAGATTC-ATCTATGGTCAACTCATGTTGA 488
Query 480 CCTAGTGAACCAACCACGTGACTCCTCACGTGATGCTACCACTCACCATATTTCCATCCT 539
|||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 CCTAGTTAGCAAACCACGTGACTCCTCACGTGATGCTACCACTCACCATATTTCCATCCT 548
Query 540 TGGGGCTCTTCTAGTTTTTGGGGGAAACATTTCCATCTCACTTTGGTTTTTATTGCAGGT 599
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 549 TGGGGCTCTTCTAGTCTTTGGTGGTAACATTTCCATCTCACTTTGGTTTTTATTGCAGGT 608
Query 600 TAAGATAAGCAAACAATTTGGAGGGCCTTATTGGAACGCGACTCTAATGAACATGATGGG 659
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 609 TAAAATAAGCAAACAATTTGGAGGGCCTTATTGGAACGCGACACTAATGAACATGATGGG 668
Query 660 AGGCGTAGTGGCTATGCTTGTCGCTCTTTGCTGGGAACACGATTTAGATG-AATGGAGAT 718
| |||||||||||||||||||||||||||||||| ||| |||||| || | |||||||||
Sbjct 669 AAGCGTAGTGGCTATGCTTGTCGCTCTTTGCTGGAAACGCGATTT-GAAGGAATGGAGAT 727
Query 719 TAGGATGGAATATCAGACTATTAACCATTGCTTATGCGGCAATTCTGATTTCCGGGATGG 778
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 728 TAGGATGGAATATCAGACTCTTAACCATTGCTTATGCGGCAATTGTGATTTCCGGGATGG 787
Query 779 TGGTAGCAGTCAACGCATGGTGCATTGAGTCTAGAGGACCGTTATTTGTATCGGTATTTA 838
|||||||||| |||||||||||| | ||||||||||| ||||| |||||||| |||||||
Sbjct 788 TGGTAGCAGTAAACGCATGGTGCGTCGAGTCTAGAGGGCCGTTGTTTGTATCAGTATTTA 847
Query 839 GCCCTGTAGGACTTGTGATCGTAGCTCTTGTTGGATCATTT-TTGCTAGATGAAACACTT 897
||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 848 GCCCTATAGGACTTGTGATCGTAGCTCTTGTTGGATCATTTGTT-CTAGATGAAACACTT 906
Query 898 CATTTGGGGAGCATAATTGGTACAGTGATTATCGTTGGAGCATTATA-CATTGTGCTATG 956
||||||||||||||| |||||||||||||||||||||||| |||||| | ||||||||||
Sbjct 907 CATTTGGGGAGCATAGTTGGTACAGTGATTATCGTTGGAGGATTATATC-TTGTGCTATG 965
Query 957 GGCTAAAAACAAGGAAATGAAGAGTATGCTTACGACATCGGATCATAATGAAACAAATAA 1016
|| |||||||||||||||||||||||| | ||||| ||| |||||| ||||||||||||
Sbjct 966 GGGTAAAAACAAGGAAATGAAGAGTATCCCAACGACCTCGAATCATATTGAAACAAATAA 1025
Query 1017 GACTAGCAAAGATATCACAGTCAACAATCTCCCAACATTAAGTACAAATGTCCCTTGA 1074
|||||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct 1026 GACTAGCAAAGACATCACACTCAACAATCTCCCCACATTAAGTACAAATGTCCTTTGA 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39990939933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5