BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68180.1
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475935 jgi|Araly1|475935|fgenesh2_kg.2__1065__AT1G68180.1 1469 0.0
> Ahg475935 jgi|Araly1|475935|fgenesh2_kg.2__1065__AT1G68180.1
Length=937
Score = 1469 bits (795), Expect = 0.0
Identities = 893/941 (95%), Gaps = 4/941 (0%)
Strand=Plus/Plus
Query 1 CTTTGTCTTGCCTCTTCTTGAAAACATGTACACGTATTTAATTATAAATGCATATATAAA 60
||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| |
Sbjct 1 CTTTGTCTTGCCTCTTCTTAAAAACATGTACACGTGTTTAAGTATAAATGCATATATTTA 60
Query 61 GATCCTACCGACGaaaaaataaaaaGATTGAAAACATGACATCTGCTTATCGTCCAAGAG 120
||| ||||| || |||| ||||||||||| ||||||||||||||| |||||||||||||
Sbjct 61 GATTCTACCAAC--AAAATTAAAAAGATTGGAAACATGACATCTGCGTATCGTCCAAGAG 118
Query 121 TTATTGTGAATGGAACAAGAAGAACAAGAACGTTCCATTACTTCTATTGTCGCCATTGTA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 119 TTATTGTGAATGGAACAAGAAGAACAAGAACGTTCCATTACTTCTATTGTCGTCATTGTA 178
Query 181 GCCGTACCATTAGGCTAAGAAGCTTTGGTCTATATGGTCCCATATGTCCTTTCTGTTCTA 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 179 GCCGTACCATTAGGCTAAGAAGCTTTGGTCTATATGGTCCTATATGTCCTTTCTGTTCTA 238
Query 241 GAGAGATCAATCTTCACGATGAGCTTGACATTATGAGGCCAAGCCGACCTTATTGGGATA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GAGAGATCAATCTTCACGATGAGCTTGACATTATGAGGCCAAGCCGACCTTATTGGGATA 298
Query 301 GTGATACCGATTGGATCACTCTCCATCTTATCAACGAACCAAGAAGTAACCGGTTCAATC 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 CCGATACCGATTGGATCACTCTCCATCTTATCAACCCTCCAAGAAGTAACCGGTTCAATC 358
Query 361 ATGATGATCTAGTTTATAATACTGACGAGGAATTCGCTGATGTCATGCCTAGTGTACAAA 420
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 359 GTGATGATCTAGTTTATAATACCGACGAGGAATTCGCTGATGTTATGCCTAGTGTACAAA 418
Query 421 TCGGTCCACCACCAGCCTCGCAATCCGCCATCGAGGCTGTAAGGACGGTGATAATCACGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 419 TCGGTCCACCACCAGCCTCGCAATCCGCCATCGAGGCTGTAAGGACGGTGACAATCACGG 478
Query 481 ATGAAGATTTGGTGAAAGAGAAGGTTTGTGCGATATGCAAGGAGGAATTTGAAGTTGGAG 540
| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 AGGAAGATTTGGCGAAAGAGAAAGTTTGTGCGATATGCAAGGAGGAATTTGAAGTTGGAG 538
Query 541 AGGAAGGAAAAGAATTGAAATGCTTGCATTTGTACCATTCAAGCTGCATTGTGTCTTGGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGGAAGGAAAAGAATTGAAATGCTTGCATTTGTACCATTCAAGCTGCATTGTGTCTTGGT 598
Query 601 TGAACATTCACAACACTTGTCCCATTTGTCGTTTTGAGGTTAACTTAGGTGTTTCCGAGA 660
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
Sbjct 599 TGAACATTCACAACACTTGTCCCATTTGTCGCTTTGAGGTTAACTTAGGTGTTCCCGAAA 658
Query 661 GTAACGTAGACGAAGGAGGGTCTTACAACATCGACAATGATCGATCAAATCGGTTTCGGA 720
|||||||||| |||||||||||| || || |||||||||||||| |||||||||||||||
Sbjct 659 GTAACGTAGATGAAGGAGGGTCTCACCACGTCGACAATGATCGAACAAATCGGTTTCGGA 718
Query 721 CTCGGGTTTGTTCTTTGTGGCCTCTCCGAATGATGATTGATTGGGTACATAATCTCATAG 780
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTCGAGTTTGTTCTTTGTGGCCTCTCCGAATGATGATTGATTGGGTACATAATCTCATAG 778
Query 781 GTAAGATTCCACCTCCCGATATAGCTTTCATGGCTTTTCTATTATGCTTATACGGGTTTT 840
||||||||||||||| ||||||| ||||||||||||| ||||||||||| |||| ||||
Sbjct 779 GTAAGATTCCACCTCTCGATATAACTTTCATGGCTTTCCTATTATGCTTTTACGTTTTTT 838
Query 841 GACTATGATATTTAACTCTTAAAAATATATACAATTTCGCAGATATAAGAATAACAAACT 900
||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct 839 AACTATGATATTTAACTCTTAAGAATATATATAATTTCGCAGATATATGAATAACAAACT 898
Query 901 CTTGACaaaaaaaaaTTAAAGAATTGCAAACAAGAATGTAT 941
|||||||| |||| ||||||||||||||||||||||||||
Sbjct 899 CTTGACAATAAAA--TTAAAGAATTGCAAACAAGAATGTAT 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34920591972
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5