BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68185.1
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475936 jgi|Araly1|475936|fgenesh2_kg.2__1066__AT1G68185.1 1136 0.0
> Ahg475936 jgi|Araly1|475936|fgenesh2_kg.2__1066__AT1G68185.1
Length=926
Score = 1136 bits (615), Expect = 0.0
Identities = 728/782 (93%), Gaps = 9/782 (1%)
Strand=Plus/Plus
Query 22 AAAATCACAGCAAAATAATATTCAAATTCAAAAT-C-TGTCCAAAT-TCATCTAGGG-TT 77
|||||||||||||||||| || |||||||||||| | | ||||| | |||||||||| ||
Sbjct 1 AAAATCACAGCAAAATAAAATACAAATTCAAAATCCATATCCAATTCTCATCTAGGGTTT 60
Query 78 TCTGATAAAACAGACGAAGAAGATCCAAA-TTCGCTAACAATGGGAGGTGAAGGAGAAGA 136
|||||| |||||| ||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 61 TCTGATTAAACAGGCGAAGAAGATCCAAATTTTGCT-ACAATGGGAGGTGAAGGAGAAGA 119
Query 137 TCTAGAGCCACTTTTTGATTATCGTCGTGTTCAGCCAGCGAATTTCGTTTGTATCgat-- 194
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 120 TCTAGAGCCACTTTTTGATTATCGTCGTGTTCAACCAGCGAATTTCGTTTGTATTGATGA 179
Query 195 -gatgatgatgatgatgCCTCGGTGACGCCAATTCCGAAGAAAGCGAAAACTTCACAAAC 253
||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||
Sbjct 180 CGATGATGATGATGATTCCTCGAAGACGCCGGTTCCGAAGAAAGCGAAAACTTCACAAAC 239
Query 254 AGTTGAGAAGTTAGATGATGATGTGAAAGTGATTGAAGTTACGGGTGATGACGATTGGTT 313
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 240 AGTTGAGAAGTTAGATGATGATGTGAAAGTGATTGAAGTGGCGGGTGATGACGATTGGTT 299
Query 314 GCTTCCTCCACCAAAGGTTATCTTCGACAAAAGTAAAGACTCTGTTGAAGATTCAACTAT 373
||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 300 GCTTCCTCCGCCAAAGGTTATCTTCGACAAAAATAAAGAGTCTGTTGAAGATTCAACTAT 359
Query 374 TAAAGCATTGAGGTCGAAGAAGATGGAGCTCATGTCATTTACAAAAACTGTAGGAGATGT 433
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 360 TAAAGCATTGAGGTCGAAGAAGATGGAGCTTATGTCATTTACAAAAACTGTAGCAGATGT 419
Query 434 GATGCAGGAAGTTGAGGAGTCTGCTAAAAGGGAAGTTGAAGAATCTCGCAATCCATCTTC 493
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 420 GATGCAGGAAGTGGAGGAGTCTGCTAAAAGGGAAGTTGAAGAATCTCGCAATCCACCTTC 479
Query 494 AGAGACTGCTGCTCAGTTACCATCAGAGCCTACGAATGACAGGGCCAAGATTGTTATTAC 553
|||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 480 AGAGGTTGCTGCTCAGTTACCACCAGAGCCTACGAATGACAGGGCCAAGATTGTCATTAC 539
Query 554 AATACAGGACAAAGATGGACAGAAGACACTCCGGGTGTTTGCGGACGAGAAATTTGAGAG 613
|||||||||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||
Sbjct 540 AATACAGGACAAAGATGGACAGAAGACATTCCGGGTTTTTGCGGATGAGAAGTTTGAGAG 599
Query 614 GGTTATCAAACTGTATACAGATAAAGCTAAGCTTGACCCGCAAAATCTTGTATTTATTTT 673
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||
Sbjct 600 GGTTATCAAACTGTATACGGATAAAGTTAAGCTTGACCCGCAAAATCTTGTATTTATATT 659
Query 674 TGACGGTGATAAGATTGATCCATCAACCACTCCTTCTGAACTTGGCATGGAGGATCATGA 733
||||||||||||||||||||| || ||||| |||||| |||||| |||||||||||||||
Sbjct 660 TGACGGTGATAAGATTGATCCGTCGACCACCCCTTCTCAACTTGACATGGAGGATCATGA 719
Query 734 TATGATTGAAGTGCACACCaaaaaaaCTTGACAAATAGGCGCTAATCGGAATCTGGAATG 793
|||||||||||| ||||||||| ||| ||||||| ||||||| ||||||||||||||||
Sbjct 720 TATGATTGAAGTACACACCAAACAAAGATGACAAACAGGCGCTTATCGGAATCTGGAATG 779
Query 794 TC 795
||
Sbjct 780 TC 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38199162834
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5