BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68200.1
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475938 jgi|Araly1|475938|fgenesh2_kg.2__1068__AT1G68200.1 1517 0.0
> Ahg475938 jgi|Araly1|475938|fgenesh2_kg.2__1068__AT1G68200.1
Length=932
Score = 1517 bits (821), Expect = 0.0
Identities = 896/932 (96%), Gaps = 6/932 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAACAAAATCGCGCCGTTTAGTTACAGCGGAAGCTCCGCCGGAAATTCATCCAGT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 1 ATGGAAAACAAAATCGCGCCGTTTAGTTACAGCGGAAGCTCCGCCGGAGATTCTTCTTGT 60
Query 61 GGCGGCGTCGTTTCGTCGTCTCTCTACTCTGATCAACTCTACAAGTCGACTCGCAACATA 120
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 61 AGCGGCGTCGTTTCGTCGTCTCTTTTCTCTGATCAACTCTACAAGTCGACTCGCAACATC 120
Query 121 ATGCAACAGCGTCAAGATATGGTGAATCGCGAGGCGTTGTGTTACACGCGTCTCCATGAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 ATGCAACAGCGTCAAGATATGGTGAATCGCGAGGCGTTGTGTTACACGCGTCTTCATGAG 180
Query 181 GCTTCGCTTGAAGCAGAAGCGCTTCGTCTAGAGAACACTGAACTCCGATCGATGAATCTT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 GCTTCGCTTGAAGCAGAAGCGCTTCGTCTAGAGAACACTGAACTCCGATCGATGAATCGT 240
Query 241 CGTCTCAAGAATGAGCTCAACAGTCTCATCAGATCTTCGATCCAGAACCGATTTGATCAT 300
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 CATCTCAAGACTGAGCTCAACAGTCTCATCAGATCTTCGATCCAGAACCGATTTGATCTT 300
Query 301 CGATCTCCGCTTCGGATGCTTAGCAATCTTTCGATCGGAGGTAATGACGCCGACGAAGT- 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGATCTCCGCTTCGGATGCTTAGCAATCTTTCGATCGGAGGTAATGACGCCGACGAAGTG 360
Query 360 G-G----AGAATCAGAACCGTACGGTTAATCGCGATGACGTCAATGATAAGAGTCCGACG 414
| | ||||||||||||||||||||||||| ||||| |||| |||| |||||||||||
Sbjct 361 GAGAATCAGAATCAGAACCGTACGGTTAATCGTGATGATGTCAGTGATGAGAGTCCGACG 420
Query 415 AGTGTTATGGAGAATGAGGATCTGAATCGCTCTTCGCTTCCAAAGAGCATCTCTGTGAGA 474
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 421 AGTGTTATGGAGAATGAGGATCTCAATCGTTCTTCGCTTCCGAAGAGCATCTCTGTGAGA 480
Query 475 TCTAATGGCTACTCTAAGGCAAGTCAGGGAGGTGGTGGTGCGGCTGCTCAAAGTGGAAAA 534
|||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTAGTGGTTACTCTAAGGCGAGTCAGGGAGGTGGTGGTGCGGCTGCTCAAAGTGGAAAA 540
Query 535 CCTCGTGGAACCGTCACTAAGCCTGGGACTTGTGGTCAAGTCAGTACTACGCAGAAGGTG 594
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 CCTCGTGGAACCGTAACTAAGCCTGGGACTTGTGGTCAAGTCAGTACGACGCAGAAGGTG 600
Query 595 TATGTGCGAGGAGGAGGGAAGAAAGAAGATCAGGAGGAAGAGATAGAAGTGGAGGTGTAC 654
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 TATGTGCGAGGAGGAGGGAAGAAAGAAGATCAGGAGGAGGAGATAGAAGTGGAGGTGTAC 660
Query 655 AATCAAGGGATGACAAAGACAGAGCTGTGCAACAAATGGCAAGAGACAGGGACATGCCCA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATCAAGGGATGACAAAGACAGAGCTGTGCAACAAATGGCAAGAGACAGGGACATGCCCA 720
Query 715 TATGGTGACCATTGCCAGTTCGCTCACGGCATTAAGGAACTCCGTCCAGTGATCCGCCAT 774
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 TATGGTGACCATTGCCAGTTCGCTCACGGCATTAAGGAACTCCGCCCAGTGATCCGCCAT 780
Query 775 CCCCGTTACAAGACTGAGGTTTGCAGAATGGTTCTTGCTGGTGATAACTGTCCTTATGGT 834
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCGCGTTACAAGACTGAGGTTTGCAGAATGGTTCTTGCTGGTGATAACTGTCCTTATGGT 840
Query 835 CACCGTTGCCACTTCCGCCACTCACTATCTGAGCAGGAGAAGCTCGTTGCTGCTGGTTTC 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CACCGTTGCCACTTCCGCCACTCACTATCTGAGCAGGAGAAGCTCGTTGCTGCTGGTTTC 900
Query 895 AAACCCAAGTCATCCCTCAAGCTGATCACATG 926
|||||||||||||||||||||||| | |||||
Sbjct 901 AAACCCAAGTCATCCCTCAAGCTGCTTACATG 932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34386871134
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5