BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68210.1
Length=2268
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315838 jgi|Araly1|315838|fgenesh1_pm.C_scaffold_2000871 841 0.0
> Ahg315838 jgi|Araly1|315838|fgenesh1_pm.C_scaffold_2000871
Length=1941
Score = 841 bits (455), Expect = 0.0
Identities = 661/758 (87%), Gaps = 23/758 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGGATGCTTAGTTCCTGAATGTGCTGATGATATTTCCATCCTGCTAATCGACCAT 60
|||||| || ||||||||| |||| || |||||| |||||||| |||||||||||||||
Sbjct 1 ATGGCTAGAAGCTTAGTTCATGAAAGTTTTGATGACATTTCCATTCTGCTAATCGACCAT 60
Query 61 GACACTGCATCAATCGCGTCTCTCACATCAATGCTTCAACAATTTTCAAAAAGAGTGATG 120
|||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 61 GACACTGCATCAGTCGCGTCTCTCACGTCAATGCTTAAACAATTTTCAAAAAGAGTGATG 120
Query 121 AGCGTGGATGTGGCAAGTAAGGCTCTATCGATGATTGAGAAGCAGAAGAAGGAAATTGGA 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 121 AGCGTGGATGTGGCAAGTAAGGCTTTATCGATGATTGAGAAGCAGAAGAAGGACATTGGA 180
Query 181 CTCATCATAGCTAACATTGAAATGCCTCACATAGACTCACATTCGTTCCTCAATGCTTTG 240
|| |||||||| |||||||||||||||||||| ||| || |||| ||||||| | ||||
Sbjct 181 CTTATCATAGCCAACATTGAAATGCCTCACATCGACGCAGATTCCTTCCTCACCGTTTTG 240
Query 241 CTTCTCAAAGATATTCCTCTCATATTGATTAATCCAGAGATAAAGACAAAAGAA-CCATC 299
|||| |||||||||||||||||||||||| |||||||||||||||||||| ||| |||||
Sbjct 241 CTTCACAAAGATATTCCTCTCATATTGATCAATCCAGAGATAAAGACAAA-GAAACCATC 299
Query 300 AGATCTTTTGACAAAAAGAGCGTGCTTTTCTCTAGATAAACCAATTTCAAATGACGACAT 359
||||||||||| ||||||||||||||||||||||||| | |||||||| || | |||||
Sbjct 300 AGATCTTTTGATAAAAAGAGCGTGCTTTTCTCTAGATCAGCCAATTTCTGATAATGACAT 359
Query 360 CAAAAACATGTGGCAACACGTCTT-CTCTAAAAAGAGTCAAGAGTTAAAGAAAATCAACA 418
||||||||| ||||| ||||| || | ||||||||| |||||||| ||||||||||||||
Sbjct 360 CAAAAACATATGGCAGCACGTGTTAC-CTAAAAAGATTCAAGAGTCAAAGAAAATCAACA 418
Query 419 TAACTGAA-GATCA--AG-AGAATGTCATGGATAAAGATACATATCAGATTGAAGCTTTC 474
|||| || | | | || |||||| || ||| ||||||| | ||||||| |||| ||||
Sbjct 419 TAAC-GATTGTTAACCAGGAGAATGGCACGGACAAAGATATAAATCAGATAGAAGTTTTC 477
Query 475 CGAGCAAACCTTAAGAGACAGAGAATAAGTCAAGCTTCTTTGTTAGGAAGACGACCATTC 534
| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 478 AGGGCAAGCCTTAAGAGACAGAGAACAAGTCAAGCTTCTTTGTTAGGAAGACAACCTTTT 537
Query 535 ATCGACACATTTTCAACTTATGAAACATTCCAAAAGAGAAAAAGTATTGCAAATGTTGAA 594
||||||||||| ||| || ||||||| |||||||||||||| || ||||||||||||
Sbjct 538 ATCGACACATTCACAATTTCCGAAACATCCCAAAAGAGAAAAAATAGGGCAAATGTTGAA 597
Query 595 TGGAAAACTACACCAAGTTATGCT-ATTGAGATTGAGAATAAGAGAAAGGAATGGAAGAA 653
|||||||||| |||| ||| | || |||| ||||||||||||||||||||||||||||||
Sbjct 598 TGGAAAACTAAACCAGGTTGT-CTTATTGGGATTGAGAATAAGAGAAAGGAATGGAAGAA 656
Query 654 AA-G--T-GT--TG--G-AAGACGTAAGA-GTTTGTGGAATAGTGAGCGTCACATGAAGT 703
|| | | || || | |||||||| || |||| |||| || ||||||||| |||||||
Sbjct 657 AATGGATAGTAGTGTTGTAAGACGTA-GAAGTTTATGGACTAATGAGCGTCATATGAAGT 715
Query 704 TTATAGCTGCTATCTCCATTTTGGGTGAAGAAGATTTT 741
|| ||||||||||||||||| | |||||| ||| ||||
Sbjct 716 TTTTAGCTGCTATCTCCATTCTAGGTGAAAAAG-TTTT 752
Score = 793 bits (429), Expect = 0.0
Identities = 1016/1278 (79%), Gaps = 126/1278 (10%)
Strand=Plus/Plus
Query 1013 TTTTGTTTAAAAAACCTAT--TGGTGAGAAAGAGGAAACA-ATGCCAAAGTTTCATATAG 1069
|||| |||||||||||||| | |||||| | ||| | ||||||||||||||| |||
Sbjct 749 TTTTATTTAAAAAACCTATCACCGAGAGAAACA--AAA-ATATGCCAAAGTTTCATGTAG 805
Query 1070 GCGGGAAATTAGATCTAAGCAATCATTCAGTTCATGGTAACGTCCTTAACAAGCT-ATCT 1128
|||| |||| ||||| |||||||||||| || ||||||| | |||||||| | ||||
Sbjct 806 GCGGAAAATCGGATCTGAGCAATCATTCACTTGTTGGTAACATATTTAACAAG-TCATCT 864
Query 1129 ATGAATGTTAACT-TCGTTCCTTCAACCATAAGTAATAATCCAGCTTACAATATTCTTTC 1187
|| |||||||||| | ||||||||||||||||||||||| ||| |||||||||||| |
Sbjct 865 ATAAATGTTAACTAT-GTTCCTTCAACCATAAGTAATAACCCACCTTACAATATTC--T- 920
Query 1188 TATCGATAGCTCTAGTATCGATAGCTCTAGCTATACTGGTTTAGTTTCAACTGGCTTAAG 1247
| || || | | | || || | ||| | |||| |||||| | | |
Sbjct 921 T-TC--TA-C-C--G-AT-AAT-G--CTAACCATAC-----TAGTTT--A---G-----G 953
Query 1248 TAGTGAAAATTC-TCCTATCCTTTATGGTTTACCATCGAATGATGGTGCATCTAACACAT 1306
||||||||| | ||||||||||| |||||||||||| |||| | |||||||||||||||
Sbjct 954 TAGTGAAAA-CCTTCCTATCCTTTCTGGTTTACCATCAAATGTTCGTGCATCTAACACAT 1012
Query 1307 GCACATCTCAGATGGAATCCGA-AAGGATTTCTATTCCGCAGTATGATCCTAATCAATGT 1365
|| ||| ||||||||||||| | || |||||| |||||||||||||||||||||| || |
Sbjct 1013 GCGCATTTCAGATGGAATCC-ACAAAGATTTCCATTCCGCAGTATGATCCTAATCCATTT 1071
Query 1366 CACCCACATAGATCCATCCTTGAAACTGATGTAAACCAAATAGATTTAGATTTTACTTCT 1425
|||| || |||||| |||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1072 CACCTACCTAGATCTGTCCTTGAAACTGATGTAAGCCAAATAGATTTAGATTTTACATCT 1131
Query 1426 ATACTAGATTC-TTTCGATCCTCTAGTAG-ATGAGTGCCTTATGAAGGAAAACAATAGAT 1483
| || ||||| |||| ||||| | ||| | || | | ||| | || || ||
Sbjct 1132 ACACCCGATTCTTTTC-ATCCT-T--TAGCA-GA-T--C-TAT----G--CACTAT-GA- 1174
Query 1484 TTCTTCCAAACCCTACCATGAA-CCTTTTGGATACCGATATAGA-CAAGATGGATTGGGT 1541
| | | ||||||||| |||||| || || ||||||| ||| ||||||||| |
Sbjct 1175 -AC-T----A---TACCATGAACCCTTTT-GAAACTAATATAGACCAA-ATGGATTGGCT 1223
Query 1542 TTCATTTATAGAAAACCT-TAGTCACCATGATATCAATATGAACCATATGGATTGGGATC 1600
| ||||||||||||| | |||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1224 TCCATTTATAGAAAA-TTATAGTCATCATGAAATCAATATGAACCATATGGATTGGGATC 1282
Query 1601 CTTCAACAGCAAATTACGTTCTTCCTGAAACCAACATGAACATAAATTTTCCTGAAAAAC 1660
||||| || ||||| | |||||| |||||| | ||||||||| ||||||||||||||
Sbjct 1283 ATTCAATAGAAAATTTCATTCTTCTTGAAACTGATGTGAACATAAGTTTTCCTGAAAAAC 1342
Query 1661 ATACAAACGAGATAGG-TTGGGTTTCTTCACAAGTAGGTTATGTTCCTTTTGAAAATATG 1719
|||||||| |||| || ||||||||||||| || |||||||||||||||||||||| ||
Sbjct 1343 ATACAAACCAGAT-GGATTGGGTTTCTTCAGGAGAAGGTTATGTTCCTTTTGAAAATGTG 1401
Query 1720 ATTCCCTCTGAAGTAGATATAAACCATATGGGCATGGGTTATTCTGGAGGAAGTATTCCC 1779
| ||||||| |||||||||||| ||| |||| ||| | ||| | | | |
Sbjct 1402 AATCCCTCTAAAGTAGATATAAGCCAGATGGACATAG---ATT----A-----T-T-C-- 1445
Query 1780 CCTCAAGAAGAAACTAATACAAATAATGTGGGCTTTGTTTCTTGTGAAATACAT-AGTGA 1838
|||||| |||||||||||||| ||||||| |||||||||| |||||||| | | ||
Sbjct 1446 --TCAAGAGGAAACTAATACAAACCATGTGGGTTTTGTTTCTTCTGAAATACGTTA-TGG 1502
Query 1839 AATCCCTCCCAAAACTAATATGGCCATTCTAGAAACCAATTATTCAAATCC-GTTAGATT 1897
|||||||| |||||| ||||| ||||||| ||| ||||||||||||| | | ||||||
Sbjct 1503 CATCCCTCCTAAAACTGATATGACCATTCTTGAAGCCAATTATTCAAA-CATGGTAGATT 1561
Query 1898 GGGTTTTCCCTGAAGATATAACTTCACTCGAAACCAATACCATCCAAAAG-AGTTTGGTT 1956
| ||||| ||| ||||||||| |||||| ||||| ||||||||||||||| | |||||||
Sbjct 1562 GTGTTTTTCCTAAAGATATAAGTTCACTTGAAACTAATACCATCCAAAAGGA-TTTGGTT 1620
Query 1957 TCTTGTGAAACAAGTTACGATGCTTTGGATAATATGGTTCCT-TTGGAAACCAATATGGA 2015
|||||| ||||||||| | ||| |||||||| || |||||| ||| || ||||||||||
Sbjct 1621 TCTTGTAAAACAAGTTTTGCTGCATTGGATAACATAGTTCCTCTTG-AAGCCAATATGGA 1679
Query 2016 AGAGATGAACGATGCT-CTT-T-ACGATA-TT-T----C---GATTGAAGATCTGATTTC 2063
|||||||||| ||| | ||| | | || | || | | ||||||||||||||||||
Sbjct 1680 AGAGATGAACTATGTTTCTTATGATGAAAGTTGTGATGCTCCGATTGAAGATCTGATTTC 1739
Query 2064 TTTTGACATTGATGCCAATGAGAAGGATATATTCTCTTGGTTAGAAGACAATGGTTTTTC 2123
|||||||||| | | ||||||||||||| ||||||||| || |||||||||||||
Sbjct 1740 TTTTGACATTAACGTGGATGAGAAGGATATGCCCTCTTGGTTGGACGACAATGGTTTTTT 1799
Query 2124 TGAG-GAAAATAATATGATGGAGTCATGCGAATATCATAATATAGAA-TCTGTGAATCAA 2181
||| || | |||||||||| |||| ||||||||||| ||| ||||| | ||||||||||
Sbjct 1800 TGAAAGAGA-TAATATGATGAAGTCTTGCGAATATCACAATGTAGAAAT-TGTGAATCAA 1857
Query 2182 AGTGATGATATGAAGATAGACGATAACTTTGATGATTATCGTGA-ATGCATGGATTGGAT 2240
|| ||| || ||||| ||| ||||| ||||||||||||||||| | ||||||||||||
Sbjct 1858 AGAGATCATTTGAAGGGAGAAGATAATTTTGATGATTATCGTGACAA-CATGGATTGGAT 1916
Query 2241 TAACGAAG-AGATGAATA 2257
| | || | | |||||||
Sbjct 1917 TTATGAGGTA-ATGAATA 1933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85398329290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5