BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68220.1
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475940 jgi|Araly1|475940|fgenesh2_kg.2__1070__AT1G68220.1 1199 0.0
> Ahg475940 jgi|Araly1|475940|fgenesh2_kg.2__1070__AT1G68220.1
Length=841
Score = 1199 bits (649), Expect = 0.0
Identities = 797/862 (92%), Gaps = 36/862 (4%)
Strand=Plus/Plus
Query 1 AGGACACTTTAACGTTTCTTCACTTGCCCAAAGCTCTCTGAAGATAAAAGACAAAAGAGT 60
|||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||
Sbjct 1 AGGACACTTTAACGTTTCTTCACTTGACCAAAGCTCTCTAAAGAT-AAAGACAAAAGAGT 59
Query 61 AAAGAGAGAAAGAAGC-ACGAAAACCAAATCAATGGCGGTTTCAGTTTCAATCCTCACCG 119
|||||||| ||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct 60 AAAGAGAG-AAGAAGCAAAGAAAACCAAATCAATGGCGGTTTCCGTTTCAATCCTCACCG 118
Query 120 TCGTCACTGCTCTTCACCTCCTTGCTTTCGTCTTCGCCTTCGGTGCCGAGCGTCGCCGTA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TCGTCACTGCTCTTCACCTCCTTGCTTTCGTCTTCGCCTTCGGTGCCGAGCGTCGCCGTA 178
Query 180 GCACCGCTGTGCCGGTTCCGGATCAGTACGATGAGAAGAC-TATTTGTAAGTACGGAACT 238
|||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 179 GCACCGCTGTGCCGGTGCCGGACCAGTACGATGAGAAGACCT-TTTGTAAGTACGGAACT 237
Query 239 GAGGCGTCGACAGTGTACGGTATGTCGGCGTTTGGGTTGCTTCTTGTTAGCCAAGCGGTG 298
||||| ||||| || ||||||||||||||||||||||| |||||||||||||| ||| ||
Sbjct 238 GAGGCATCGACGGTATACGGTATGTCGGCGTTTGGGTTACTTCTTGTTAGCCAGGCGTTG 297
Query 299 GTTAACGGTGTTACTAAGTGTCTCTGTTTTGGAAAGGGTCTTGTTACTGGTACTTCTTAC 358
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 298 GTTAACGGTGTTACAAAGTGTCTCTGCTTTGGAAAGGGTCTTGTTACTGGTACTTCTTAC 357
Query 359 ACTGTCTGGGCTATTGTCTTCTTCGTTGTTTCTTGGGTAAGCTTTTTAGGAGCTGAGGCG 418
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACTGTGTGGGCTATTGTCTTCTTCGTTGTTTCTTGGGTAAGCTTTTTAGGAGCTGAGGCG 417
Query 419 TGCTTGTTGGGTGGATCAGCGAGGAACGCGTACCACACTAAAAGTGAAGGCATTTACAAA 478
|| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 418 TGTTTGTTGGCTGGATCAGCGAGGAATGCGTACCACACTAAAAGTGAAGGCATTTACAAA 477
Query 479 GGGAAAGAGCTTTCGTGTGCCGTCTTACCCGTTGGAGTCTTTGCTGCTGGAGCTGCTTTC 538
||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 478 GGGAAAGAGATTTCGTGTGCCGTCTTACCTGTTGGGGTCTTTGCTGCTGGAGCTGCTTTC 537
Query 539 ACTCTCATGTCTTTGATTGCAACCATTCTTTACTACTTGGCTCATTCTAAGGCTGATACT 598
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 538 ACTCTAATGTCTTTGATTGCAACCATTCTTTACTACTTGGCTCATTCTAAGGCTGACACT 597
Query 599 GGCGGATGGGAGAAGCATCAGAACGATGGCATTAACATTGGTATGACCACTCCTTCAGAT 658
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GGTGGATGGGAGAAGCATCAGAACGATGGCATTAACATTGGTATGACCACTCCTTCAGAA 657
Query 659 GCTCCAAAGCAACAAAACACCGAGTTTAACAAGGTCTAAACCAGTTTCTGTTTGGTCTTA 718
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 658 GCTCCAAAGCAACAAAACACCGAGTTCAACAAGGTCTAAACCAATTTCTGTTTGGTCTTA 717
Query 719 TGTTGGCTATGCTTTTAAAAACAGGGTAAAACTATaaaaaaaaTAGTTGTTTGTTAATTG 778
|||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 718 TGTTGG-TACGCTTTTAAAAACAGGGTAAA---------------GTTGTTTGTTAATTG 761
Query 779 T-CAATATAAACTTGTGT-CGTCAGATATAA--TGT-T-G--G-CTTATGTATGTCTAT- 828
| || ||||||||||||| | |||||| ||| ||| | | | |||||||||||||||
Sbjct 762 TTCA-TATAAACTTGTGTTC-TCAGATGTAAGATGTGTTGTTGGCTTATGTATGTCTATC 819
Query 829 ---GAGAAATTTGGTTTGGCTC 847
|||||||||||||||||||
Sbjct 820 TATGAGAAATTTGGTTTGGCTC 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31337037774
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5