BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G68230.2

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg315840 jgi|Araly1|315840|fgenesh1_pm.C_scaffold_2000873           800    0.0  


> Ahg315840 jgi|Araly1|315840|fgenesh1_pm.C_scaffold_2000873
Length=492

 Score =  800 bits (433),  Expect = 0.0
 Identities = 469/487 (96%), Gaps = 0/487 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGGTTTTTGGATATGAAATGGATGAACATAGAGCTTCTTCATCGAGACGACGAAGA  60
            ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct  1    ATGGCGGTTTTTGGATACGAAATGGATGAACATAGAGCTTCTTCATCGAGAAGACGAAGA  60

Query  61   TCTTTGTACCACAATCTAGGAGGAGGACGATTTGCTGATATAATGTTCTGGAAGAACAAG  120
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  61   TCTTTGTACCACAATCTAGGAGGAGGACGATTTGCTGATATAATATTCTGGAAGAACAAG  120

Query  121  AAAGAATCAGGAACAATCTTGGGGGTATTCACATTGATATGGTTCTTGTTCGAAGTGGTT  180
            ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  121  AAACAATCAGGAACAATCTTGGCGGTATTCACATTGATATGGTTCTTGTTCGAAGTGGTT  180

Query  181  GAATATCCTTTCATCACTTTCCTCTGCCAGATCCTCTTACTATTCATTTTCATATTCCTC  240
            |||||||||||||| |||||| |||||||||||||||| |||| ||||||||| ||||||
Sbjct  181  GAATATCCTTTCATTACTTTCATCTGCCAGATCCTCTTGCTATCCATTTTCATCTTCCTC  240

Query  241  ATTTGGTCTTACATTGGCTCCTCACAACTAATCCAGAGTAAACCTCCGAGTATTAATGAT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ATTTGGTCTTACATTGGCTCCTCACAACTAATCCAGAGTAAACCTCCGAGTATTAATGAT  300

Query  301  CTAAGGATTTCGGAATCGAATTGGAGATTCTTGTTCAACAAGATAAACTGGTTCATCATC  360
            ||||||||||||||||||| |||||||||||||||||||||||| || |||||||| |||
Sbjct  301  CTAAGGATTTCGGAATCGACTTGGAGATTCTTGTTCAACAAGATCAATTGGTTCATTATC  360

Query  361  AAATTGTATGATATTTCAAGTGGCAAAGACTTCAGACTCCTTTTTCTGGCCGTTGTTTCC  420
            |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  361  AAATTGTATGATATCTCAAGTGGCAAAGACTTTAGACTCCTTTTTCTGGCCGTTGTTTCA  420

Query  421  CTATGGATATTATCAGTGGTTGGAAACTATTTCAGCTCTCTAACTCTATTATACATCGGT  480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  421  CTATGGATATTATCAGTGGTTGGAAACTATTTCAGCTCTCTAACTCTATTATACATTGGT  480

Query  481  GAGTCTT  487
            |||||||
Sbjct  481  GAGTCTT  487



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17742348885


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5