BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G68238.1

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475942 jgi|Araly1|475942|fgenesh2_kg.2__1072__AT1G68238.1         479    6e-135


> Ahg475942 jgi|Araly1|475942|fgenesh2_kg.2__1072__AT1G68238.1
Length=380

 Score =  479 bits (259),  Expect = 6e-135
 Identities = 344/383 (90%), Gaps = 13/383 (3%)
 Strand=Plus/Plus

Query  1    GATGCACAAAAACTCTTTCAATGGTGAGAGGAGAACTCGCGGTAATA---GCGGCGGGTA  57
            ||||||||||||||||||| |||||||||||||||||||||||  ||   ||||||||||
Sbjct  1    GATGCACAAAAACTCTTTCGATGGTGAGAGGAGAACTCGCGGTGGTACGGGCGGCGGGTA  60

Query  58   ATGGTGAAGTCTCACTCTACATTTGGGCAGCTGTTGTGGCTTTCTCCGTCATAGCAGCCG  117
            ||||||||||||  ||||||||||||||||||||||||||| ||||| |||||||| || 
Sbjct  61   ATGGTGAAGTCTTGCTCTACATTTGGGCAGCTGTTGTGGCTCTCTCCATCATAGCAACCT  120

Query  118  TGATTTTCTCATGCAGTGACCGAGCTTCTAAACCTCACACTAACGACGATGTCAATGGAT  177
            ||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct  121  TGATTTTCTCATGTAGCGACGGAGCTTCTAAACCTCACACTAACGACGATGTCAATGGCT  180

Query  178  CCAG-TTGCGCCGCTGGCTGCGGTGGTGGTTGTGGAGGTTAAACGGGAAGCATTTTTTGT  236
            || | |||||||||||||||||||||||||||||||||| ||| |||||||| |||||||
Sbjct  181  CC-GCTTGCGCCGCTGGCTGCGGTGGTGGTTGTGGAGGTCAAAGGGGAAGCACTTTTTGT  239

Query  237  TTACTTTAGTAACATTTAAAGATAAAAC-TAT-T-TTGGCTTCTTGCTTTAATaaaaaaa  293
            | ||||||||||||||| |||||||| | ||| | |||||||||||||||||||||||  
Sbjct  240  TCACTTTAGTAACATTTGAAGATAAACCATATATATTGGCTTCTTGCTTTAATAAAAA--  297

Query  294  GTTAAAGTGT-GT--AGATAATTTGTAGCCAATGAATGTATTCTGCTTCTTGAATTTAAC  350
            |||||||||| ||  ||||||| |||| |||||||| ||||| |||||||||||||||||
Sbjct  298  GTTAAAGTGTAGTGTAGATAATGTGTAACCAATGAACGTATTATGCTTCTTGAATTTAAC  357

Query  351  ATTTTAGTGATCTAGTTCGTTTT  373
            || ||||||||||| || |||||
Sbjct  358  ATGTTAGTGATCTAATTAGTTTT  380



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13392611739


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5