BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68240.1
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475944 jgi|Araly1|475944|fgenesh2_kg.2__1074__AT1G68240.1 961 0.0
> Ahg475944 jgi|Araly1|475944|fgenesh2_kg.2__1074__AT1G68240.1
Length=819
Score = 961 bits (520), Expect = 0.0
Identities = 630/681 (93%), Gaps = 16/681 (2%)
Strand=Plus/Plus
Query 186 TGTTACCAAAAACAATGATCATGAGAAACACGACGAGGAGCCAGACGAGGAAAGTTACCG 245
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 150 TGTTACCAAAAACAGTGATCATGAGAAACACGGCGAGGAGCAAGACGAGGAAAGTTACCG 209
Query 246 TATGGCTAAACGGCAACGTTCCATGGAATATCGTATGATGATGGAGAAGAAAAGACGAAA 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 TATGGCTAAACGGCAACGTTCCATGGAATATCGTATGATGATGGAGAAGAAAAGACGAAA 269
Query 306 GGAGATCAA-AGATAAAGTAGATATTTTGCAGGGGTTGATGCCTAATCATTGCACAAAGC 364
|||||| || | ||||||||||||||||||||||| |||||||||||| || | ||||||
Sbjct 270 GGAGATTAACA-ATAAAGTAGATATTTTGCAGGGGATGATGCCTAATCGTTCCCCAAAGC 328
Query 365 CGGACCTTGCATCGAAGCTTGAAAACATCATTGAATACATTAAAAGTTTGAAATATCAAG 424
| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 329 CCGACCTTGCATCGAAGCTTGAACACATCATTGAATACATTAAAAGTTTAAAATATCAAG 388
Query 425 TAGATGTTATGTCA-ATGGCATACACAACAACTCCGGTTTACACACCACCATTTTATGCA 483
|||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 389 TAGATGTTATGT-ATATGGCATACACAGCAACTCCGGTTTACACATCACCATTTTATGCA 447
Query 484 GCAGCTCAAGCACCATGTATGTCTCCTTGGGGCTATTATACGCCAGGAGTTCCAATGATG 543
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 448 GCAGCTCAAGCACCATGTATGTCGCCTTGGGGCTATTATACGCCAGGAGTTCCAATGATG 507
Query 544 CCTCAGCAAAACATGACCTATATCCCGCAATATCCTCAGGTATATG-GAACAGTGCCGCC 602
|||||||||||||||||||||||||||||||||| ||||||||||| || ||| ||||||
Sbjct 508 CCTCAGCAAAACATGACCTATATCCCGCAATATCATCAGGTATATGAGA-CAGCGCCGCC 566
Query 603 AAATCAAACTCAACCTTAAAACAAGCTCTAGCTATGTGGCTTTTTAAGACCCTCCGGCTT 662
|||||||||||| |||||||||||||| ||||||||||||| ||||||||| ||| ||||
Sbjct 567 AAATCAAACTCATCCTTAAAACAAGCTTTAGCTATGTGGCTCTTTAAGACCATCCTGCTT 626
Query 663 TAGACTCGTTGCTGTTTATATAGACTGTCTTTGTAAACTAAGATATGTACATAGATACAT 722
|||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 627 TAGACTCGTTTCTGTTTATATAGAATGTATTTGTAAACTAAGATATGTACATAGATACAT 686
Query 723 AAAT-ACATACGT-AGTTTTATGTATAACTTTTAGTTTGATGCCACAATATGTAAAAACA 780
||| ||| | || | ||| |||| ||| |||||||||||||||||||||||||||| |
Sbjct 687 AAAGGACA-A-GTTACTTTCATGTGTAAAGTTTAGTTTGATGCCACAATATGTAAAAATA 744
Query 781 CCTGTTTTTTATGTTCTGTTTTGGTTGAGCATTGTTCCTCTGTTATTTATGTTCTGTTTT 840
| |||||| |||||||||||| | |||||| ||| ||||||||||| ||||||||||
Sbjct 745 CTTGTTTTCTATGTTCTGTTT-G-TTGAGCGTTGGTCCTCTGTTAT----GTTCTGTTTT 798
Query 841 GCTCAACCTTTTTCTTTGTTG 861
|||||||||||||||||||||
Sbjct 799 GCTCAACCTTTTTCTTTGTTG 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34729977387
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5