BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G68250.1

Length=822
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475945 jgi|Araly1|475945|fgenesh2_kg.2__1075__AT1G68250.2         298    4e-80


> Ahg475945 jgi|Araly1|475945|fgenesh2_kg.2__1075__AT1G68250.2
Length=225

 Score =  298 bits (161),  Expect = 4e-80
 Identities = 201/221 (91%), Gaps = 0/221 (0%)
 Strand=Plus/Plus

Query  363  ATGGACAACGATCGAGATACCGTAGAGTTCTGGTCCTCACTTTTCCAATCCTTTGCTGAC  422
            ||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct  1    ATGGACACCGATCGAGATACCGTAGAGTTTTGGTCCTCATTTTTCCAATCCTTTGCTGAC  60

Query  423  TCAGAACCTAAAGATAATCCATATCCTGTGGTTAGAAGCCCGATAATGACCATGTCTACA  482
            |||||||||||||||  || |||||| ||||| |||||||||||||||||||||||||||
Sbjct  61   TCAGAACCTAAAGATGGTCTATATCCGGTGGTAAGAAGCCCGATAATGACCATGTCTACA  120

Query  483  CCGATGGCCATTGATGAGCCGGTTGAGCCATGGAAAGTTCTTGAATATGGAGGTAAGGAG  542
            | |||| |||||||||| |||| |||||| ||||| |||||||||||||||||  |||||
Sbjct  121  CTGATGACCATTGATGAACCGGCTGAGCCGTGGAAGGTTCTTGAATATGGAGGCCAGGAG  180

Query  543  GTTCGTCCGATGGCCATTGATGAGCCGGCTGAGCCATGGAA  583
            ||||| |||||||| ||||||| ||| ||||||||||||||
Sbjct  181  GTTCGACCGATGGCAATTGATGTGCCAGCTGAGCCATGGAA  221



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30383964849


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5