BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68260.1
Length=830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475946 jgi|Araly1|475946|fgenesh2_kg.2__1076__AT1G68280.1 811 0.0
Ahg913375 jgi|Araly1|913375|Al_scaffold_0001_3629 496 1e-139
Ahg922673 jgi|Araly1|922673|scaffold_103954.1 398 4e-110
> Ahg475946 jgi|Araly1|475946|fgenesh2_kg.2__1076__AT1G68280.1
Length=573
Score = 811 bits (439), Expect = 0.0
Identities = 522/561 (93%), Gaps = 9/561 (2%)
Strand=Plus/Plus
Query 73 ACCGGCACGGCGACTCCGGCTATGCCTGCGGTAGTGTTTCTC-AATTCATGGAGACGACC 131
||||| |||||| ||||||| ||| | | | ||||||| | ||||||| ||||||||
Sbjct 19 ACCGGAACGGCGGCTCCGGCAATG--T-CTATGGTGTTTC-CGAATTCATCAAGACGACC 74
Query 132 ACTTAGT-ATTCCTCTCCGGAGCGTAAAAACCTTCAAGCCTCTAGCA-TTCTTCGATCTC 189
||| | ||||||||||||||| ||| |||||||||||||| ||| ||| |||||||
Sbjct 75 GGTTA-TGCTTCCTCTCCGGAGCGCAAAGACCTTCAAGCCTCTCGCATTTC-TCGATCTT 132
Query 190 AAAGGAGGCAAAGGAATGAGTGAGTTCCATGAGGTTGAACTCAAAGTTCGTGATTATGAA 249
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 133 AAAGGAGGCAAAGGGATGAGTGAGTTCCATGAGGTTGAGCTCAAAGTTCGTGATTATGAA 192
Query 250 TTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTCAACACGGTCGA 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 TTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTCAACACGGTCGA 252
Query 310 CATGAGTTTCTAGAGAGTATCGGTATCAACTGCGACGAAGTAGCACGTTCTGGGGAAGCC 369
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 253 CATGAGTTTCTAGAGAGTATCGGTATCAACTGTGACGAAGTAGCACGTTCTGGGGAAGCC 312
Query 370 TTAGCAATTTCAGAGTTGACAATGAAGTTCCTTTCACCTTTACGTAGCGGAGACAAATTC 429
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 313 TTAGCAATTTCAGAGTTGACAATGAAGTTCCTTGGACCTTTACGTAGCGGAGACAAATTT 372
Query 430 GTGGTGAAAGCGAGGATATCGGGGACATCTGCTGCGCGTATTTACTTCGATCATTTCATC 489
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 373 GTGGTGAAAGCAAGGATATCGGGGACATCTGCTGCGCGTATTTACTTTGATCATTTCATC 432
Query 490 TTTAAACTTCCAAATCAAGAGCCTATATTGGAGGCAAAAGGAATAGCTGTGTGGCTCGAC 549
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 433 TTTAAACTTCCTAATCAAGAGCCTATATTGGAGGCTAAAGGAATAGCTGTGTGGCTTGAC 492
Query 550 AACAAGTACCGTCCTGTTCGCATCCCATCTTCTATACGTTCTAAATTTGTTCACTTCCTA 609
|||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 493 AACAAGTACCGTCCTGTTCGTATCCCATCTTCAATACGCTCTAAATTTGTTCACTTCCTA 552
Query 610 CGCCAAGACGACGCCGTTTGA 630
|||||||||||| ||||||||
Sbjct 553 CGCCAAGACGACACCGTTTGA 573
> Ahg913375 jgi|Araly1|913375|Al_scaffold_0001_3629
Length=567
Score = 496 bits (268), Expect = 1e-139
Identities = 470/565 (83%), Gaps = 23/565 (4%)
Strand=Plus/Plus
Query 65 TTCAGGTTACCGGCACGGCGACTCCGGCTATGCCTGCGGTAGTGTTTCTCAATTCATGGA 124
|||| | |||||||| |||| |||| | ||||| | || ||||||| | ||| ||||
Sbjct 5 TTCAAGCTACCGGCATGGCGGCTCCAGTTATGCAT---GTGGTGTTTCCCCGTTCTTGGA 61
Query 125 GACGACCACTTAGT-ATTCCTCTCCGGAGCGTAAAAACCTTCAAGCCTCTAGCAT-TCTT 182
| |||| | || | | ||||||||||||| ||||||||| || || || |||| ||||
Sbjct 62 GGCGACGGCATA-TCCTGCCTCTCCGGAGCGCAAAAACCTTTAAACCCCTTGCATGTCTT 120
Query 183 CG-ATCTCAAAGGAGGCAAAGGAATGAGTGAGTTCCATGAGGTTGAACTCAAAGTTCGTG 241
| || | | |||| |||||||||| |||| |||||||||| ||||||| ||||||||||
Sbjct 121 -GAAT-TGAGAGGAAGCAAAGGAATAAGTGGGTTCCATGAGATTGAACTTAAAGTTCGTG 178
Query 242 ATTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTCAAC 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ATTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTCAAC 238
Query 302 ACGGTCGACATGAGTTTCTAGAGAGTATCGGTATCAACTGCGACGAAGTAGCAC-GTTCT 360
|||||||||| |||||| | || ||||||||||||||||| | |||||| || |||||
Sbjct 239 ACGGTCGACACGAGTTTATGGATAGTATCGGTATCAACTGTAATGAAGTAT-ACCGTTCT 297
Query 361 GG-GGAAGCCTTAGCAATTTCAGAGTTGACAATGAAGTTCCTTTCACCTTTACGTAGCGG 419
|| ||| ||||| |||||| | ||||||||||| |||||||| ||| ||||||||| ||
Sbjct 298 GGTGGA-GCCTTGGCAATTCCTGAGTTGACAATAAAGTTCCTCGCACATTTACGTAGTGG 356
Query 420 A-GACAAATTCGTGGTGAAAGCGAGGATATCGGGGAC-ATCTGCTGC-GCGTATTTACTT 476
| | || || ||||||||| |||||||||| ||| | ||||| || ||| ||||||||
Sbjct 357 ATG-CAGGTTTGTGGTGAAAACGAGGATATCTGGG-CTATCTG-TGGTGCGCATTTACTT 413
Query 477 CGATCATTTCATCTTTAAACTTCCAAATCAAGAGCCTATATTGGAGGCAAAAGGAATAGC 536
|| || ||||||||||| |||||||||||||||||||| |||||||| ||||||| |||
Sbjct 414 TGAACAATTCATCTTTAACCTTCCAAATCAAGAGCCTATTTTGGAGGCTAAAGGAACAGC 473
Query 537 TGTGTGGCTCGACAACAAGTACCGTCCTGTTCGCATCCCATCTTCTA-TACGTTCTAAAT 595
||||||||| |||||||||||||| |||| ||| |||||||| | | |||| || | ||
Sbjct 474 TGTGTGGCTTGACAACAAGTACCGCCCTGCTCGTGTCCCATCT-CAAGTACGCTC-ATAT 531
Query 596 TT-GTTCACTTCCTACGCCAAGACG 619
|| | |||||| | ||||||| |||
Sbjct 532 TTTGGTCACTTTCAACGCCAACACG 556
> Ahg922673 jgi|Araly1|922673|scaffold_103954.1
Length=661
Score = 398 bits (215), Expect = 4e-110
Identities = 360/428 (84%), Gaps = 17/428 (4%)
Strand=Plus/Plus
Query 123 GAGACGACCACTTAGT-ATTCCTCTCCGGAGCGTAAAAACCTTCAAGCCTCTAGCAT-TC 180
||| |||| |||| || | |||||||| |||| ||| |||||||| ||||| |||| ||
Sbjct 92 GAGTCGACAACTT-GTCCTGCCTCTCCGAAGCGCAAAGACCTTCAAACCTCTGGCATGTC 150
Query 181 TTCGATCTCAAAGGAGGCAAAGGAATGAGT-GAGTTCCATGAGGTTGAACTCAAAGTTCG 239
|| | || | ||| ||||||| ||| | || |||||||| ||||||||||||||||
Sbjct 151 -TCAAACT--GA-GAGTCAAAGGAGTGAATGGA-CTCCATGAGATTGAACTCAAAGTTCG 205
Query 240 TGATTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTCA 299
||||||||||| || || |||||||||| ||||||||||||||| ||||||||||| ||
Sbjct 206 CGATTATGAATTAGACCAATTTGGTGTTGAGAACAATGCTGTTTATGCAAACTACTGCCA 265
Query 300 ACACGGTCGACATGAGTTTCTAG-AGAGTATCGGTATCAACTGCGACGAAGTAGCACGTT 358
|||||||| ||| |||||| | | ||||||||||||||||||| || |||||| | ||||
Sbjct 266 ACACGGTCAACACGAGTTTAT-GAAGAGTATCGGTATCAACTGTGATGAAGTATCCCGTT 324
Query 359 CTGGGGAAGCCTTAGCAATTTCAGAGTTGACAATGAAGTTCCTTTCACCTTTACGTAGCG 418
|||| |||||||| ||| |||| ||||||||||| ||||| ||| |||||||||| || |
Sbjct 325 CTGGTGAAGCCTTGGCAGTTTCTGAGTTGACAATAAAGTTTCTTGCACCTTTACGAAGTG 384
Query 419 GA-GACAAATTCGTGGTGAAAGCGAGGATATCGGGGACATCTGCT-GCGCGTATTTACT- 475
|| | ||| || ||||||||| ||||||||||||||||||| | | ||||| |||||||
Sbjct 385 GATG-CAAGTTTGTGGTGAAAACGAGGATATCGGGGACATCCG-TGGCGCGCATTTACTA 442
Query 476 TCGATCATTTCATCTTTAAACTTCCAAATCAAGAGCCTATATTGGAGGCAAAAGGAATAG 535
| || || |||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 443 T-GAACAGTTCATCTTTAAACTTCCAAATCAAGAGCCTATTTTGGAGGCAAAAGGAACGG 501
Query 536 CTGTGTGG 543
|||||||
Sbjct 502 TTGTGTGG 509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30688948185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5