BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68290.1
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475947 jgi|Araly1|475947|fgenesh2_kg.2__1077__AT1G68290.1 1411 0.0
> Ahg475947 jgi|Araly1|475947|fgenesh2_kg.2__1077__AT1G68290.1
Length=1014
Score = 1411 bits (764), Expect = 0.0
Identities = 863/912 (95%), Gaps = 2/912 (0%)
Strand=Plus/Plus
Query 14 aaaaacaacaacacacatttcaaagaactctgaaatggcaaaccaaaaaGGGTTACATGT 73
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1 AAAAACAACAACACACATTTCAAAGAACTCTGAGATGGCAAACCAAAGAGGGTTACATGT 60
Query 74 AGTGATGATGATCATCACTGTTTGGCTTCTTTATGCAGCACCTAATATCCATGGATGGGG 133
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 61 AGTGATGATGATCATCACTGTTTGGCTTCTTTATGCAGCACCTAGCATCCATGGCTGGGG 120
Query 134 AAAAGAAGGTCATGAAATCATCTGTAAAATCGCTCAGACTAGGTTGGATGAAACAGCAGC 193
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 121 GAAAGAAGGTCATGAAATCATCTGTAAAATCGCGCAGACTAGGTTGGATGAAACCGCAGC 180
Query 194 AAAGGCCGTGAAAGAGCTGTTACCTGAATCTGCAGAAGGAGACCTCTCAAGCTTGTGTCT 253
|||||| ||||||||||||||||||||||| |||||||||||| | || |||||||||||
Sbjct 181 AAAGGCGGTGAAAGAGCTGTTACCTGAATCCGCAGAAGGAGACTTGTCTAGCTTGTGTCT 240
Query 254 TTGGGCTGATCGTGTCAAGTTCAGATACCACTGGTCTTCTCCTCTTCATTACATCAACAC 313
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 241 TTGGGCTGATCGTGTCAAGTTTAGATACCACTGGTCTTCTCCTCTTCATTATATCAACAC 300
Query 314 TCCTGATGCATGCTCATACCAATACAATAGGGACTGCAAGGACGAATCTGGAGAGAAAGG 373
|||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 301 TCCTGATGCATGTTCATACCAATACAATAGGGACTGCAAGGATGAAGCTGGAGAGAAAGG 360
Query 374 AAGATGTGTTGCGGGAGCCATTTACAACTACACCACACAGCTTCTTTCCTACAAAACTGC 433
|||||||||||| |||||||||||||| |||||| ||||||||||||||||||| |||||
Sbjct 361 AAGATGTGTTGCAGGAGCCATTTACAATTACACCTCACAGCTTCTTTCCTACAACACTGC 420
Query 434 AGCTTCATCTCAGTCACAATACAACTTAACCGAGGCCCTGCTCTTCGTGTCCCATTTCAT 493
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 AGCTTCATCTCAGTCACAGTACAATTTAACCGAGGCCCTGCTCTTCGTGTCCCATTTCAT 480
Query 494 GGGTGATATCCATCAGCCTCTACATGTGAGTTATGCTTCAGACAAAGGAGGTAACACCAT 553
|||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||
Sbjct 481 GGGTGATATCCATCAGCCTCTACATGTGGGTTACGCTTCAGACAAAGGAGGGAACACCAT 540
Query 554 CGAAGTACATTGGTACA-CGAGAAAAGCTAACCTCCACCATATATGGGATTCCAACATTA 612
|||||| || ||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 CGAAGTGCACTGGTACAGC-AGAAAAGCTAACCTCCACCATATATGGGATTCCAATATTA 599
Query 613 TCGAAACAGCTGAAGCAGATCTCTATAACTCTGCACTAGAAGGAATGGTGGATGCACTCA 672
||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct 600 TCGAAACTGCTGAAGCAGATCTCTACAACGCTGAACTAGAAGGAATGGTGGATGCACTCA 659
Query 673 AAAAGAATATCACGACAGAATGGGCAGATCAAGTTAAGAGATGGGAGACCTGCACAAAGA 732
| ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||
Sbjct 660 AGAAGAATATCACGACAGAATGGGCTGATCAAGTCAAGAGATGGGAGAGTTGCACAAAGA 719
Query 733 AGACAGCATGTCCAGACATATACGCATCCGAAGGAATTCAAGCAGCCTGTGACTGGGCAT 792
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 720 AGACAGCATGCCCAGACATATATGCATCCGAAGGAATTCAAGCAGCCTGTGACTGGGCAT 779
Query 793 ACAAGGGGGTAACGGAAGGAGACACTCTAGAAGATGAATACTTCTATTCACGTCTACCGA 852
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 780 ACAAGGGGGTAACTGAAGGAGACACTCTAGAAGATGAATACTTTTATTCACGTCTACCAA 839
Query 853 TAGTGTATCAGCGGTTAGCACAGGGAGGGGTGAGACTAGCAGCTACCCTAAACAGGATTT 912
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 840 TAGTGTATCAGCGCTTAGCACAAGGAGGGGTGAGACTGGCAGCTACCCTAAACAGGATTT 899
Query 913 TCGGTTGAAGCT 924
||||||||||||
Sbjct 900 TCGGTTGAAGCT 911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40753398273
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5