BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68300.1
Length=766
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475948 jgi|Araly1|475948|fgenesh2_kg.2__1078__AT1G68300.1 963 0.0
Ahg892981 jgi|Araly1|892981|Al_scaffold_0006_977 198 4e-50
Ahg887772 jgi|Araly1|887772|Al_scaffold_0085_1 198 4e-50
> Ahg475948 jgi|Araly1|475948|fgenesh2_kg.2__1078__AT1G68300.1
Length=694
Score = 963 bits (521), Expect = 0.0
Identities = 645/702 (92%), Gaps = 20/702 (3%)
Strand=Plus/Plus
Query 10 AATCGACACGTCATCATTCTGACTTTTCTCAAAGAAGAG-AAATCAAATCACCAAGTCAT 68
||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||||
Sbjct 1 AATCGACACGTCATCATGCTGACTTTTCTCTATGAAGAGAAAATCAAATCACCAAGTCAT 60
Query 69 CGGAGCGATCACAGA-GAAGAAGAAAACCATGGCGGAAGAAGAGAAAAGCGTGATGAAGC 127
||||||||||||| | | |||||||||||||||||||||||||||||||| ||| |||||
Sbjct 61 CGGAGCGATCACA-ACGGAGAAGAAAACCATGGCGGAAGAAGAGAAAAGCTTGAAGAAGC 119
Query 128 AAGTGATGGTGGCGATTGATGAAAGCGAATGTAGTAAACGCGCTCTTCAATGGACGCTCG 187
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 120 AAGTGATGGTGGCGATTGATGAAAGCGAATGTAGTAAACGCGCTCTTCAATGGACGCTTG 179
Query 188 TGTATCTCAAAGATAGCCTCGCCGATTCCGACATCATCCTCTTCACTGCTCAACCTC-AT 246
| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
Sbjct 180 TCTATCTCAAAGATAGCCTCGCCGATTCCGATATTATCCTCTTCACTGCTCAACCTCCA- 238
Query 247 CTTGATCTCAGCTGCGTCTATGCTTCCTCTTATGGCGCCGCTCCGATTGAGCTTATAAAC 306
|| ||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 239 CTCGATCTCAGCTGTGTTTATGCTTCCTCCTATGGCGCCGCTCCGATTGAGCTGATAAAC 298
Query 307 TCATTGCAAGAGAGTCATAAGAACGCTGGATTGAATCGTCTTGATGAAGGAACCAAAATT 366
||| ||||||||| | ||| |||||||||||||||||| ||||| ||||| |||||||||
Sbjct 299 TCAATGCAAGAGAATTATAGGAACGCTGGATTGAATCGGCTTGAGGAAGGGACCAAAATT 358
Query 367 TGTGCTGAGACTGGGGTTACTCCAAGAAAGGTGTTGGAATTTGGAAATCCTAAAGAAGCG 426
|||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 359 TGTGCTGAGATTGGGGTAACTCCAAGAAAGGTTTTGGAATTTGGAAATCCTAAAGAAGCC 418
Query 427 ATATGTGAAGCTGCTGAGAAGCTTGGTGTTGATATGCTTGTGGTTGGAAGCCATGGTAAA 486
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 419 ATATGTGAAGCTGCTGAGAAGCTTGGTGTTAATATGCTTGTAGTTGGAAGCCATGGTAAA 478
Query 487 GGAGCATTACAAAGGACTTTCCTTGGAAGTGTTAGCAATTACTGTGTTAACAATGCTAAG 546
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 479 GGAGCATTACAAAGGACTTTCCTTGGGAGTGTTAGCAATTACTGTGTTAACAATGCTAAG 538
Query 547 TGCCCAGTTCTTGTGGTGAGAACAAAAGCTTGAAGACCTCTTCTCATGAAAGAGTTCGAG 606
|||||||||||||||||||| |||||||||||||||||||||||||| | | ||||
Sbjct 539 TGCCCAGTTCTTGTGGTGAGGACAAAAGCTTGAAGACCTCTTCTCATTA-----T-CGAG 592
Query 607 AACCCTGGCTTGATGTGTGTGT-GTT--GTAAACATATTG---ATAATAATGCTCTGCTT 660
|||||||||||||||||||||| || |||||||||||| |||||||||||||||||
Sbjct 593 AACCCTGGCTTGATGTGTGTGTTGTAAAGTAAACATATTGCTGATAATAATGCTCTGCTT 652
Query 661 GGTTACTATTGTTT---GAAGAAACTTTGTGAGTAAACATAA 699
| ||| || ||||| ||||| |||||||||||| ||||||
Sbjct 653 GATTAATACTGTTTTTAGAAGATACTTTGTGAGTACACATAA 694
> Ahg892981 jgi|Araly1|892981|Al_scaffold_0006_977
Length=312
Score = 198 bits (107), Expect = 4e-50
Identities = 125/134 (93%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 318 GAGTCATAAGAACGCTGGATTGAATCGTCTTGATGAAGGAACCAAAATTTGTGCTGAGAC 377
|||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 108 GAGTCATAAGAATGCTGGATTGAATCGGCTTGATGAAGGAACCAAAATTTGTGATGAGAT 167
Query 378 TGGGGTTACTCCAAGAAAGGTGTTGGAATTTGGAAATCCTAAAGAAGCGATATGTGAAGC 437
||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 168 TGGTGTTACTCCAAGAAAGGTGTTGGAATTTAAAAATCCTAAAGAAGCCATATGTGAAGT 227
Query 438 TGCTGAGAAGCTTG 451
||||||||||||||
Sbjct 228 TGCTGAGAAGCTTG 241
> Ahg887772 jgi|Araly1|887772|Al_scaffold_0085_1
Length=351
Score = 198 bits (107), Expect = 4e-50
Identities = 125/134 (93%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 318 GAGTCATAAGAACGCTGGATTGAATCGTCTTGATGAAGGAACCAAAATTTGTGCTGAGAC 377
|||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 147 GAGTCATAAGAATGCTGGATTGAATCGGCTTGATGAAGGAACCAAAATTTGTGATGAGAT 206
Query 378 TGGGGTTACTCCAAGAAAGGTGTTGGAATTTGGAAATCCTAAAGAAGCGATATGTGAAGC 437
||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 207 TGGTGTTACTCCAAGAAAGGTGTTGGAATTTAAAAATCCTAAAGAAGCCATATGTGAAGT 266
Query 438 TGCTGAGAAGCTTG 451
||||||||||||||
Sbjct 267 TGCTGAGAAGCTTG 280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28249081497
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5