BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68310.1
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475950 jgi|Araly1|475950|fgenesh2_kg.2__1080__AT1G68310.1 1048 0.0
> Ahg475950 jgi|Araly1|475950|fgenesh2_kg.2__1080__AT1G68310.1
Length=727
Score = 1048 bits (567), Expect = 0.0
Identities = 679/729 (93%), Gaps = 24/729 (3%)
Strand=Plus/Plus
Query 49 AAAATGGTATCTGGGTTGATTAATGAGAACCCTATCATTTACCCAAAGAAAGAGAGGCGT 108
||||||||| ||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1 AAAATGGTAACTGGGTTGATTAACGAGAACCCAATCATTTACCCGAAGAAAGAGAGGCGT 60
Query 109 CTTCGTACTGATACAAGCATTACTGATGAGCTTACACCAGAACCAATTGATCAACTTGAG 168
||||| |||||| |||||| ||| |||||| |||||||||||||||||||||||||||||
Sbjct 61 CTTCGAACTGATTCAAGCACTACCGATGAGTTTACACCAGAACCAATTGATCAACTTGAG 120
Query 169 ATTTTTGATATCC-----TTT----CTT-C-AT-C---------AAATATCAAAGATCCA 207
||||||||||||| ||| || | || | | ||||||||||||||
Sbjct 121 ATTTTTGATATCCTTAATTTTGGGAATTGCAATCCTTTTGTTGTAGATATCAAAGATCCA 180
Query 208 GAGCATCCTAATACTCTGGAAGATCTCAGAGTAGTTACAGAAGACTCAGTTGAAGTGGAT 267
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GAGCATCCTAATACTCTGGAAGATCTCAGAGTAGTTACGGAAGACTCAGTTGAAGTGGAT 240
Query 268 GATGAGAACAGTTATGTTAGGGTTACGTTCACTCCAACTGTCGAACATTGTAGCATGGCA 327
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GATGAGAACAGTTATGTTAGGGTTACGTTCACTCCAACTGTGGAACATTGTAGCATGGCA 300
Query 328 ACCGTTATCGGTCTTTGTGTCCGTGTGAAACTTCTACGAAGCCTTCCTTCTCGATACAAG 387
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 301 ACCGTTATCGGTCTTTGTGTCCGCGTGAAACTTCTGCGAAGCCTTCCTTCTCGATACAAG 360
Query 388 ATTGATATAAGGGTAGCACCTGGTTCTCATGCAACAGAAGATGCATTGAATAAACAACTA 447
||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 ATTGATATACGGGTAGCGCCTGGTTCTCATGCAACAGAGGATGCATTGAATAAACAACTA 420
Query 448 AACGATAAAGAACGTGTGGCGGCTGCACTAGAGAATCCAAACCTCGTGGAGATGGTTGAT 507
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 421 AACGATAAAGAACGTGTGGCGGCTGCACTAGAGAATCCAAACCTTGTGGAGATGGTCGAT 480
Query 508 GAATGCCTGCCATCAGAAGAGTGAATTGCTTTTATTTTCTTGTGAGCAAGTAATTTACAC 567
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 481 GAATGCCTGCCATCAGAAGAGTGAATTGTTTTTATTTTCTTGTGAGCAAGTAATTTACAC 540
Query 568 AAGCCTGGTGGTCTCAGTTTACACTATCAATACATGTCTCTGTTTTATTTGCAAAGATTT 627
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 AAGCCTGGTGGTCTCAGTTTACACTAACAATACATGTCTCTGTTTTATTTGCAAAGATTT 600
Query 628 TGATCCATCACATCGACTAGGACTTGCATTGTAATACTTACTCTGATTTCAAGTTTGTTC 687
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 601 TGATCCATCACATCGACTAGGACT-GCATTGTAATTCTTACTCTGATTTCAAGTTTGTTC 659
Query 688 TCAATCATTTCAATAAAGTCTCAA-ACACAAGTTCTTTTTAATAAAAGTTGACGTGTCAT 746
|||||||||||||||||||||||| | |||| ||||||||| |||||||||| |||||||
Sbjct 660 TCAATCATTTCAATAAAGTCTCAATA-ACAATTTCTTTTTACTAAAAGTTGAAGTGTCAT 718
Query 747 TTCGATTTC 755
|||||||||
Sbjct 719 TTCGATTTC 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829729410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5