BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68320.1
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339072 jgi|Araly1|339072|fgenesh1_pg.C_scaffold_2001171 1293 0.0
> Ahg339072 jgi|Araly1|339072|fgenesh1_pg.C_scaffold_2001171
Length=858
Score = 1293 bits (700), Expect = 0.0
Identities = 812/865 (94%), Gaps = 11/865 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAATTCGATgaagaagaagaagagctt--c-aaagaaagtgaagatgaagaacta 57
||||||||||| |||||||||||| | | ||| | |||||||||||||| | ||| ||
Sbjct 1 ATGGAAAATTCAATGAAGAAGAAG-A-A-CTTCACTAAAGAAAGTGAAGAGGCAGAGCTG 57
Query 58 agaagaGGGCCTTGGACTTTGGAGGAAGACACACTTCTCACAAATTACATCCTCCATAAC 117
|||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct 58 AGAAGAGGGCCTTGGACTTTGGAGGAAGACACTCTTCTCACTAATTACATTCTCCATAAC 117
Query 118 GGTGAGGGTCGTTGGAATCACGTCGCCAAATGTGCTGGGCTAAAGAGAACTGGGAAAAGT 177
||||| |||||||||||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 118 GGTGAAGGTCGTTGGAATTACGTCGCTAAATGTGCTGGGCTAAAGAGAACTGGAAAAAGT 177
Query 178 TGTAGATTGAGATGGTTGAATTACTTGAAACCCGACATAAGACGAGGGAATCTTACTCCT 237
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 178 TGTAGATTGAGATGGTTAAATTACTTGAAACCCGACATAAGACGAGGGAATCTAACTCCT 237
Query 238 CAAGAACAGCTTTTGATCCTTGAGCTTCACTCTAAATGGGGTAATAGGTGGTCCAAGATT 297
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CAAGAACAACTTTTAATCCTTGAGCTTCACTCTAAATGGGGTAATAGGTGGTCCAAGATT 297
Query 298 GCACAGTACTTGCCAGGAAGAACGGATAACGAGATCAAGAACTATTGGAGAACAAGAGTT 357
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 298 GCACAGTACTTACCAGGAAGAACTGATAACGAGATCAAGAACTATTGGAGAACAAGAGTT 357
Query 358 CAAAAACAAGCTCGTCAACTCAACATCGAATCTAACAGCGACAAGTTCTTTGACGCTGTT 417
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CAAAAACAAGCTCGACAACTCAACATCGAATCTAACAGCGACAAGTTCTTTGACGCTGTC 417
Query 418 CGTAGTTTTTGGGTCCCTAGATTGATCGAGAAGATGGAACAAAACTCATCCACTACTACT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 418 CGTAGTTTTTGGGTCCCTAGATTGATCGAGAAGATGGAACAAAACTCATCCACAACTACT 477
Query 478 ACTTATTGTTGTCCCCAAAACAACAACAACAACTCTCTTCTTCTTCCTTCTCAATCTCAC 537
|||||||||||||||| || |||||||||||||||||| |||||||||||||||||||
Sbjct 478 ACTTATTGTTGTCCCC--AA-AACAACAACAACTCTCTTAATCTTCCTTCTCAATCTCAC 534
Query 538 GACT-CTTTAAGTATGCAAAAAGATATAGATTACTCGGGTTTCAGCAACATAGACGGTTC 596
|||| | | || |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 535 GACTCCATGAA-TATGCAAAAAGATATAGATTACTCCGGTTTCAGCAACATAGACGGTTC 593
Query 597 TTCTTCAACTTCTACTTGCATGTCTCATCTAACAACAGTTCCACACTTTATGGATCAAAG 656
||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 594 TTCTTCAACTTCTACTTTCATGTCTCATCTAACGACAGTTCCACACTCTATGGATCAAAA 653
Query 657 CAACACCAATATCATCGATGGCTCGATGTGTTTCCATGAAGGCAATGTTCAAGAATTCGG 716
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 654 CAACACCAATATCATCGATGTCTCGATGTGTTTCCATGAAGGTAATGTTCAAGAATTGGG 713
Query 717 AGGATATGTTCCTGGCATGGAGGATTACATGGTAAACTCGGACATCTCAATGGAATGTCA 776
||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 714 AGGTTATGTCCCTGGCATGGAGGATTACATAGTTAACTCGGACATCTCAATGGAATGCCA 773
Query 777 CGTGGCGGATGGTTATTCAGCGTACGAGGATGTTACACAAGATCCCATGTGGAATGTGGA 836
| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CATGGCAGATGATTATTCAGCGTACGAGGATGTTACACAAGATCCCATGTGGAATGTGGA 833
Query 837 TGACATTTGGCAGTTTAGGGAGTAA 861
||||||||||||||||||||| |||
Sbjct 834 TGACATTTGGCAGTTTAGGGACTAA 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39952817016
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5