BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68330.1
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475952 jgi|Araly1|475952|fgenesh2_kg.2__1082__AT1G68330.1 1230 0.0
> Ahg475952 jgi|Araly1|475952|fgenesh2_kg.2__1082__AT1G68330.1
Length=1071
Score = 1230 bits (666), Expect = 0.0
Identities = 782/836 (94%), Gaps = 16/836 (2%)
Strand=Plus/Plus
Query 299 TAA-GAGAGAGAGA-A-AGAGGTTATGGCTATAGACGTTTGTTGTTCAGAGGCTTCTGGT 355
||| |||||||||| | ||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 244 TAAGGAGAGAGAGATAGAGAGGTTATGGCTATTGACGTTTGTTGTTCAGAGGCTTCAGGT 303
Query 356 TCTGGAATCAGTCCAAGAATCTCATTCTCCTACGATCTAGACTCAACGGACGACGGTGAA 415
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 304 TCTGGAATCAGTCCAAGAATCTCATTCTCCTACGATCTAGACTCAACGGAAGACGGTGAA 363
Query 416 GTCAGATTAGACTCAACACTTCTAGATTCAGGTTCGGAGTTCGATTTTTGTTTTGGCTCA 475
||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 364 GTCAGATTAGACTCAACACTTCTTGATTCAGGTTCGGAGTTCGATTTCTGCTTTGGCTCA 423
Query 476 AGTTGTTCTGTTCAAGAAGTGTCTCCGGCTGATGAACTCTTCTCCGAAGGCAAGATTCTT 535
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 AGTTGTTCTATTCAAGAAGTGTCTCCGGCTGATGAACTCTTCTCCGAAGGCAAGATTCTT 483
Query 536 CCCGTACAGATCAAGAAAGAAGAATCTTTACCCCAGACAGTAACATTTCGGGTTCCAAGA 595
|||||||||||||||||||| |||||||| |||||||||||||| |||||||||| ||||
Sbjct 484 CCCGTACAGATCAAGAAAGACGAATCTTTTCCCCAGACAGTAACCTTTCGGGTTCAAAGA 543
Query 596 TCAGctt--ctctc-tcatcatcatcatcttcttcctcttcctcttcttcctcatcGAGA 652
|||| || ||||| |||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 544 TCAGTTTCACTCTCATCATCATCATCATCTTCTTCTTCCTCCTCTTCTTCCTCATCCAGA 603
Query 653 GCACCAGAAAAGAAGATGAGACTTAAAGAGCTTCTATTGAATCCTGAATCTGATTTCGAA 712
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 604 GCACCAGAAAAGAAGATGAGACTCAAAGAGCTTCTATTGAATCCCGAATCTGATTTCGAA 663
Query 713 GACAAGCCAAGAGGATTGTTCTTACAGTTCAAGAGAAGCATAAGTCTTAACTACGACAAA 772
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 664 GACAAGCCAAGAGGACTATTCTTACAGTTCAAGAGAAGCATAAGTCTTAACTACGACAAG 723
Query 773 AGCCGAAACAGCAAAGGGCTGATCAGATCGTTTCATTTCCTCTCACGAAGCAACTCTACT 832
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||
Sbjct 724 AGCCGAAACAGCAAAGGGCTAATCAGATCGCTTCATTTCCTCTCACGAAGCAACTCCACT 783
Query 833 CCAAACCCTAACCTTGACTTGCTTC-CCAAGGAAACCCATCACCCTCACAAGACTCACAA 891
||||||||||| ||| |||||| || |||||||||| ||||| |||||||||||||||||
Sbjct 784 CCAAACCCTAATCTTAACTTGC-TCTCCAAGGAAACTCATCAACCTCACAAGACTCACAA 842
Query 892 TCTACCTAAACACAAG-CCTCCTTTAAGAAGATCATCTTCGCTCTCTTCTTCATCAGTTC 950
||| |||||||||||| | ||| |||||||||||||||| | ||| ||||||||||| |
Sbjct 843 TCTTCCTAAACACAAGTCTTCC-TTAAGAAGATCATCTT--CACTC-TCTTCATCAGTCC 898
Query 951 CTTTTTACTCGAAGAAGCCACTCGGAAGAAACAGTTTTGGAAACGGAAACGGTGGAGTTC 1010
||| | |||| |||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 899 CTTATCACTC---GAAGCCACTCGGAAGAAAGAGTTTCGGAAACGGAAACGGTGGAATTC 955
Query 1011 GAGTCAGTCCGGTCCTGAATTTCCCACCGCCGGCCTTTATCTCAAACGTTGCCGACGGAT 1070
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 956 GAGTCAGTCCGGTCCTGAATTTCCCACCGCCGGCGTTTATCTCAAACGTTGCCGACGGAT 1015
Query 1071 TTTTCAGCATTGGATCTCTCTGTAATGGTAAGACAAACACAAAGACAAAATTATGA 1126
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1016 TTTTCAGCATTGGATCTCTCTGTAATGGTAAGACAAACACAAAGACAAAATTGTGA 1071
Score = 261 bits (141), Expect = 9e-69
Identities = 232/272 (85%), Gaps = 22/272 (8%)
Strand=Plus/Plus
Query 1 GTGACAACTACACCAACTGATTAGTCCCTCCATCTCCTATTGTCTCCTTCATAACACAAT 60
|||| ||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1 GTGAAAACTACAACAACTGATTAGTCCCTCCATCTCCTATTGTCTCCTTCGTAAGACAAT 60
Query 61 CTACAAAAAAGTTGAAGCTGTCTCTTAGCaaaaaacaaaaaGTTGAAGCTGCCATTTTTG 120
|||| ||||| || | | ||||| |||||| |||||||||||||||||
Sbjct 61 CTAC--AAAAG--CAA----------AAC-AAAAA-AAAAAGCTGAAGCTGCCATTTTTG 104
Query 121 ACTTGAGGAATCTTCATTTTTCTTCCTCTACTTTGACTTCAAATTCTTCTTCATTCTATA 180
||||||||||||||||||||||||||| || ||||| |||||| ||||||||||||| |
Sbjct 105 ACTTGAGGAATCTTCATTTTTCTTCCTTTATTTTGATTTCAAA-TCTTCTTCATTCTGCA 163
Query 181 TTCTTTAACACCGTACCCTTTTCCAAATCTTCAAGGTCTCTTTATTCTTTTCCCG-GGCT 239
|||||||| ||| | |||| |||||||||||||||||||||||||||||||| ||||
Sbjct 164 TTCTTTAATACC-T--TTTTTTTCAAATCTTCAAGGTCTCTTTATTCTTTTCCCGAGGCT 220
Query 240 TTGGCTCTTGAATGATATCAAACAAAGGCAGa 271
||| ||||||||||||||||||| |||| |||
Sbjct 221 TTGCCTCTTGAATGATATCAAACTAAGG-AGA 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47844260835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5