BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68340.1
Length=1052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926110 jgi|Araly1|926110|scaffold_201671.1 848 0.0
> Ahg926110 jgi|Araly1|926110|scaffold_201671.1
Length=799
Score = 848 bits (459), Expect = 0.0
Identities = 708/817 (87%), Gaps = 61/817 (7%)
Strand=Plus/Plus
Query 51 TAGGTTTTTGATTTTTCAATGGCGACGACGACGGGACACGAGAGATCAAAGACTCTTATC 110
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 4 TAGGTTTTTGA-TTTTCAATGGCGACGACGACGGGACATGAGAGATCAAAGACTCTTATC 62
Query 111 AATTTCTCGTTACCGAAGTTGTGGGGGACTCAACGACTTCTGCGGTGTGGGAAGGGTGAT 170
| |||||||||||||||||| |||||||||||||||| ||| |||||| ||||||||||
Sbjct 63 AGTTTCTCGTTACCGAAGTTATGGGGGACTCAACGACATCTAAGGTGTGTGAAGGGTGAT 122
Query 171 GATTCTGACGGTGACGGTGGTGAAGGTTCTAGCTCCGGCGGTGATCAACGAATCCGTCGC 230
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 123 GATTCTGACGGT---GGTGGT---GGTTCTAGCTCCGGCGGTGATCAACGAATCCGTCGC 176
Query 231 CGTTCTTCGAATTTCGAATCCGATCATCAGAATCGACGATTAAAGGTTGAATCATCGGAG 290
|| |||||||||||||||| |||| |||||||||||||||| | ||||||||||||||||
Sbjct 177 CGATCTTCGAATTTCGAATTCGATTATCAGAATCGACGATTGATGGTTGAATCATCGGAG 236
Query 291 AAAGAAGGAATCGAAGAGTTTAGAGAGAAGATTATGTTAGATCTTAGAAACGTTGCTGAT 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AAAGAAGGAATCGAAGAGTTTAGAGAGAAGATTATGTTAGATCTTAGAAACGTTGCTGAT 296
Query 351 AAGATGAAGGAATCTATATTTAGGCAACAAGTACTTCTCGGCGAAGAAGAAGAAGATAAG 410
||||||| |||||| ||| ||||| ||||||| | ||||||||||||||||| | |||
Sbjct 297 AAGATGACGGAATCGATAATTAGGGAACAAGT--T-CTCGGCGAAGAAGAAGAT-A-AAG 351
Query 411 GAGATTGAGATTGAGAGGGATGATTCTCCGCCGGA-AG--------C---G-----AC-G 452
|||| ||||| |||||||| |||||||| ||||| || | | || |
Sbjct 352 -AGATGGAGATAGAGAGGGAGGATTCTCCACCGGAGAGAGAGGTTTCACCGCCGTCACCG 410
Query 453 --GGA-GCGGCG--A-C---GGTGGAGGTACGGCCGTGGAATTTGAGAAAGAGAAGAGCT 503
||| ||| || | | |||||||||||||||||||||||||||||||||||||||
Sbjct 411 CCGGAAGCGACGGGAGCAACGGTGGAGGTACGGCCGTGGAATTTGAGAAAGAGAAGAGCA 470
Query 504 GCTTGTAAAGCTTCGATTTCTTTAGGAATTGATTCGAAAAATCAGTG-TA-AGGA-A-TC 559
|||||||||||| ||||||| |||||| |||||| | | |||| | |||| | |
Sbjct 471 GCTTGTAAAGCTCCGATTTC---AGGAATCGATTCGGGAT-T-AGTGATTGAGGAGAATA 525
Query 560 AGTGA-TGAATCCGTCGATGTTAGGAAACGAATTGGGGAAAGATAGGTCG-AGATTGTTG 617
| || ||||| ||||||| |||||||||||||||||||||||| || | ||||||| |
Sbjct 526 AACGAGTGAATTCGTCGATTTTAGGAAACGAATTGGGGAAAGATCGGA-GTAGATTGT-G 583
Query 618 -TATACGTTGTCGAAGAAGGAGATTGAAGAAGATTATATGATGATGATAGGGTTAAAA-C 675
||||||||||| |||||||||||||||||||||||||||| |||||| ||| |||| |
Sbjct 584 CTATACGTTGTCAAAGAAGGAGATTGAAGAAGATTATATGAAGATGAT-GGGACAAAAAC 642
Query 676 CACCGCGTAGGCCTAAGAAACGATCAAGAA-CTGTTCAAAAACAGATCGATTTGTTGAAT 734
|||||||||| || |||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 643 CACCGCGTAGACCGAAGAAACGATCAAGAAAC-GTTCAGAAACAGATCGATTTGTTGAAT 701
Query 735 TTTGCTTCTTATATAACTGAAATCACTGAAGATCTTTATAATGTTCCTGACCAAGCTGAG 794
|||| |||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 702 TTTGGTTCTTATATAACTGAAATCACTGAAGATCTCTACAATGTTCCAGACCAAGCTGAG 761
Query 795 AAGAGAAAGAGTTGATGATGATAATGATGGATTGGAG 831
||| ||||||| |||||||||||||||||||||||
Sbjct 762 AAGGGAAAGAG---ATGATGATAATGATGGATTGGAG 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39152235759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5